PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 162aa MW: 18319.1 Da PI: 9.8438 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.8 | 3.9e-27 | 102 | 153 | 2 | 52 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitY 52 Dgy+WrKYGqK +kgs++pr+YY+Ct+ gCp++k ver+++dpk++++ Y Tp57577_TGAC_v2_mRNA12733 102 ADGYQWRKYGQKLIKGSPYPRGYYKCTTVkGCPARKMVERAKDDPKMMVVRY 153 6**************************988********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51905 | 9.71E-17 | 6 | 84 | IPR023753 | FAD/NAD(P)-binding domain |
Gene3D | G3DSA:3.50.50.60 | 2.0E-23 | 6 | 88 | IPR023753 | FAD/NAD(P)-binding domain |
Pfam | PF01266 | 1.0E-16 | 8 | 86 | IPR006076 | FAD dependent oxidoreductase |
PROSITE profile | PS50811 | 26.704 | 96 | 153 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-27 | 97 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-23 | 99 | 154 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-29 | 101 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-23 | 103 | 153 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MDQDSQFDVI IIGAGVMGSS TAYQAAKRGL KTLLLEQFDF LHHRGSSHGE SRTIRTTYLQ 60 PHYYPLVIQS FKLWKEAQAQ VGYERTVRVA APINDNIADI PADGYQWRKY GQKLIKGSPY 120 PRGYYKCTTV KGCPARKMVE RAKDDPKMMV VRYLVVFEGP P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-18 | 99 | 153 | 15 | 68 | Probable WRKY transcription factor 4 |
2lex_A | 1e-18 | 99 | 153 | 15 | 68 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12733 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003603550.1 | 4e-45 | probable sarcosine oxidase | ||||
Swissprot | Q9SJA7 | 2e-33 | SOX_ARATH; Probable sarcosine oxidase | ||||
TrEMBL | A0A2K3NBZ6 | 5e-51 | A0A2K3NBZ6_TRIPR; Sarcosine oxidase | ||||
STRING | AES73801 | 1e-44 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-30 | WRKY DNA-binding protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12733 |
Publications ? help Back to Top | |||
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