PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12710
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 270aa    MW: 29720.1 Da    PI: 6.0173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12710genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1850100155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                + ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++aa++kl+g
  Tp57577_TGAC_v2_mRNA12710  50 CPYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFKTSREAALAYDAAARKLYG 100
                                67*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-2051108IPR016177DNA-binding domain
PfamPF008473.2E-1351100IPR001471AP2/ERF domain
PROSITE profilePS5103221.78651108IPR001471AP2/ERF domain
SMARTSM003807.2E-3551114IPR001471AP2/ERF domain
CDDcd000187.73E-2152109No hitNo description
Gene3DG3DSA:3.30.730.104.2E-3052109IPR001471AP2/ERF domain
PRINTSPR003672.9E-95263IPR001471AP2/ERF domain
PRINTSPR003672.9E-97490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSILITVLAD ITMMKSDMEV EERKKSKKPA QANSRKGCMK GKGGPENASC PYKGVRQRTW  60
GKWVAEIREP NRGARLWLGT FKTSREAALA YDAAARKLYG SRAKLNLPEI SMSKKSQGQQ  120
SLPDPQNVKT GDSYPPQINH SVDMVTXXXX XXXXXXXXXX XXXXMVTSSD FNANPNPTIP  180
MASQPLRNND CTPSLPLDGN PNPIDPTFED FLPSLETTNG GFSSLSDSIW PDDAMPIDFP  240
INYANSGIFT EANMADGNGW DSLQTPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1952108360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12128ERKKSKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462180.22e-92dehydration-responsive element-binding protein 2D
TrEMBLA0A2K3MZT41e-169A0A2K3MZT4_TRIPR; Dehydration-responsive element-binding protein 2d-like
STRINGGLYMA04G03070.21e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-41ERF family protein