PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12638

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 395aa MW: 44405.1 Da PI: 5.9806

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12638	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	322	367	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L +l Pk+ +k s a++L +AveYIk+Lq Tp57577_TGAC_v2_mRNA12638 322 SIAERVRRMRISERIKKLESLFPKS----DKQTSTADMLDLAVEYIKDLQ 367 689*******************9....788***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.954	316	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-14	319	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.31E-9	320	371	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.4E-13	321	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.1E-10	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-9	322	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MSIMYEEPRR NQEMDSSNII HSKQHYHQQH NSGLLMRYNS APISLLTSLI DNNTQSYLNN 60 EESFTSESSS SEMDTMFSKL ISSNNGWNNS EEHLQEFEVK PVKQEIGESV PQNGDYSYGG 120 SELIYQGFSN GSSNGFYGSF DGVNSKIGVR NSSSNLIRQK SSPAGFFSNE NVEDLATMRE 180 LGSFKASEVS GTLNFSSRPR MPQIAENGVQ SIEANCDQTT NLVNENGNSK CHIPSFTNEF 240 WDNSAFNAQK TEIEDEIMFS TSNGMESQEA EFCYQNLGLT HHLSLPSSST KISSSMEKFL 300 QVQGSVPCKI RAKRGFATHP RSIAERVRRM RISERIKKLE SLFPKSDKQT STADMLDLAV 360 EYIKDLQEQV QILTVRKEKC KCTSHEKQHS RQCS*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MSIMYEEPRR NQEMDSSNII HSKQHYHQQH NSGLLMRYNS APISLLTSLI DNNTQSYLNN  60
EESFTSESSS SEMDTMFSKL ISSNNGWNNS EEHLQEFEVK PVKQEIGESV PQNGDYSYGG  120
SELIYQGFSN GSSNGFYGSF DGVNSKIGVR NSSSNLIRQK SSPAGFFSNE NVEDLATMRE  180
LGSFKASEVS GTLNFSSRPR MPQIAENGVQ SIEANCDQTT NLVNENGNSK CHIPSFTNEF  240
WDNSAFNAQK TEIEDEIMFS TSNGMESQEA EFCYQNLGLT HHLSLPSSST KISSSMEKFL  300
QVQGSVPCKI RAKRGFATHP RSIAERVRRM RISERIKKLE SLFPKSDKQT STADMLDLAV  360
EYIKDLQEQV QILTVRKEKC KCTSHEKQHS RQCS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12638

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003599090.2	0.0	transcription factor bHLH130
Refseq	XP_013459160.1	0.0	transcription factor bHLH130
TrEMBL	G7IWI2	0.0	G7IWI2_MEDTR; Putative transcription factor bHLH family
STRING	AES69341	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12638