PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA1261

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

C2H2

Protein Properties

Length: 313aa MW: 34040 Da PI: 9.7541

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA1261	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F+++ L H++ H Tp57577_TGAC_v2_mRNA1261 108 FSCSFCKRQFPTSQALGGHQNAH 130 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.51E-6	105	136	No hit	No description
PROSITE profile	PS50157	11.323	108	135	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.2E-5	108	132	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	110	130	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
LLTLICIMAS KSSSISATSQ DQGDSSNSKK VAIMKEIGQD QPSNSNSNKP IDAVKLSKED 60 SVAGSKVQER DFIGGPIQVG SSSGFPSNNN GEKHKNNGKK DNSNSRSFSC SFCKRQFPTS 120 QALGGHQNAH KAERTLEKQR KQRYNSGALG LGQPHFNPYY SYPSTYFTSP YYRALGTRME 180 SLIQKPSYFK PRIDPPYRLG YGHGAICLQE TLNSSLVSLR NMRGGNSGVG NLDIDGTSTL 240 RIEDGTNNKI GAILKFEDSF TNIATTSNLD IGKKIVVAPT PIKDDIHRSK SNIEEEISNS 300 DKSFGLDLSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA1261

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013458912.1	1e-131	myb-like protein A
TrEMBL	A0A2K3LGS0	0.0	A0A2K3LGS0_TRIPR; Zinc finger protein
STRING	AES83746	1e-109	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	2e-07	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA1261