PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12577 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 245aa MW: 27573.6 Da PI: 4.454 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 5 | 28 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+ Ia++++ gRt++++k++w++ Tp57577_TGAC_v2_mRNA12577 5 RWSQIAARLP-GRTDNEIKNFWNST 28 6*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.016 | 1 | 33 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-11 | 3 | 34 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.77E-8 | 4 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-6 | 5 | 28 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.20E-6 | 5 | 29 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
LNNLRWSQIA ARLPGRTDNE IKNFWNSTLK KRLKTNNNST PSPNNSDSSD QPILDVFDMK 60 NNVIMPINEQ ELMTLCMDSS SSTSSSSMQS MHMHAMVLAD QFDPFSLLST NTRYDMTTSF 120 HDHDMPTSLT QQVGMVNDIG LSDDYGILDA NKMGLLENDF ELPPLESRIS IENKSAPIDH 180 NGKNHINHFN NSCFNNTNHI QNSNVEDLFG FGNHGQGENL RMGEWDLEGL MQDISYLPPL 240 DFQV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | LKKRLKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12577 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013459180.1 | 1e-111 | transcription factor MYB83 | ||||
TrEMBL | A0A072UVZ0 | 1e-110 | A0A072UVZ0_MEDTR; Myb transcription factor | ||||
STRING | XP_004499875.1 | 9e-99 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 7e-17 | myb domain protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12577 |