PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12573
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 392aa    MW: 44211.8 Da    PI: 8.2856
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12573genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.51.8e-2855129374
                        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                                g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k  i++l+ ++++++ +     
  Tp57577_TGAC_v2_mRNA12573  55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKCDIDKLPPLQFPQSFSQfhhL 129
                                78*************************************************************888883333221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-2656146IPR005333Transcription factor, TCP
PROSITE profilePS5136928.30256114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMSSSRDGNY QEKQGDENNM TNIEKISKTP SSTSRQWSTS SLRNPRIVRV SRTFGGKDRH  60
SKVCTIRGLR DRRIRLSVPT AIQLYDLQDK LGLGQPSKVI DWLLEATKCD IDKLPPLQFP  120
QSFSQFHHLH PQTLLPFHDQ SSNVLSHELS LGPNLYDPNS TFVGIQNLMA RSKFWDIDSR  180
INNKGKEVER EYFGDKGKWI KTNDDENQGG EASYNNFHQV STQKLFPMET HSNFLNNAMP  240
SYNNYHSEAS NLSLSQFGTS HGMFQSHQQV DPNQSSGNNA LQFPFSLPNS QLFFGPSSST  300
TPPSSSSSSL LNPFMNNSIE NDPRVQFNHF QFINSSTSSQ AMPHPLIPSF HHSFNSPPIR  360
PFPLPFSSRL LDSDNNNNGD QPDNKGSRDR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1861115155Putative transcription factor PCF6
5zkt_B5e-1861115155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU1796360.0CU179636.4 M.truncatula DNA sequence from clone MTH2-26G17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186853.10.0transcription factor TCP17-like
TrEMBLG7IZC40.0G7IZC4_MEDTR; Putative transcription factor TCP family
STRINGAES692600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5