PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LSD
Protein Properties Length: 131aa    MW: 14136.4 Da    PI: 8.2608
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12525genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.62.7e-154266125
                    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                               Cg+Cr lLsYPrGA++V+C++C+tV
  Tp57577_TGAC_v2_mRNA12525 42 CGSCRRLLSYPRGAKHVKCSCCQTV 66
                               ************************9 PP

2zf-LSD144.72.1e-1480104125
                    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                                Cg+C +lL+YP+GA+ VRC++C++V
  Tp57577_TGAC_v2_mRNA12525  80 CGSCAVLLMYPYGASQVRCSSCQFV 104
                                ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.2E-193969IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-124266IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.0E-1377105IPR005735Zinc finger, LSD1-type
PfamPF069433.0E-1180104IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MMQSQQVIKE DDDGPPPGWQ PIPTPLPPPP HPLPSGFAQM VCGSCRRLLS YPRGAKHVKC  60
SCCQTVNIVL EADQVGQVKC GSCAVLLMYP YGASQVRCSS CQFVTEIGEN NKRPPWSVQQ  120
NKPTPPKTGC *
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12525
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529323.12e-68protein LOL2
RefseqXP_028241037.12e-68protein LOL2
SwissprotO654263e-45LOL2_ARATH; Protein LOL2
TrEMBLA0A0B2PIB04e-67A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBLA0A0R0J6644e-67A0A0R0J664_SOYBN; Uncharacterized protein
STRINGGLYMA07G31600.16e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-45lsd one like 2