PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12525

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LSD

Protein Properties

Length: 131aa MW: 14136.4 Da PI: 8.2608

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12525	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.6	2.7e-15	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV Tp57577_TGAC_v2_mRNA12525 42 CGSCRRLLSYPRGAKHVKCSCCQTV 66 ************************9 PP
2	zf-LSD1	44.7	2.1e-14	80	104	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C++V Tp57577_TGAC_v2_mRNA12525 80 CGSCAVLLMYPYGASQVRCSSCQFV 104 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.2E-19	39	69	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-12	42	66	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.0E-13	77	105	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.0E-11	80	104	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MMQSQQVIKE DDDGPPPGWQ PIPTPLPPPP HPLPSGFAQM VCGSCRRLLS YPRGAKHVKC 60 SCCQTVNIVL EADQVGQVKC GSCAVLLMYP YGASQVRCSS CQFVTEIGEN NKRPPWSVQQ 120 NKPTPPKTGC *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12525

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003529323.1	2e-68	protein LOL2
Refseq	XP_028241037.1	2e-68	protein LOL2
Swissprot	O65426	3e-45	LOL2_ARATH; Protein LOL2
TrEMBL	A0A0B2PIB0	4e-67	A0A0B2PIB0_GLYSO; Protein LOL2
TrEMBL	A0A0R0J664	4e-67	A0A0R0J664_SOYBN; Uncharacterized protein
STRING	GLYMA07G31600.1	6e-68	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-45	lsd one like 2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12525