PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12360
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 424aa    MW: 48393.6 Da    PI: 5.0978
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix26.22.1e-082194175
                   trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                               +Wt  e l L++    +e + + + +  ++W+ +s ++++  + r+  qC+ kw++l  +y  +++g+k+  + +
  Tp57577_TGAC_v2_mRNA12360 21 EWTVTESLILVNEIAAVEADCSVEFSSYQQWDIISGNCAALEVDRNLAQCRRKWRSLLAEYDDVRKGRKSS-NLD 94
                               599999999**9999*******9999****************************************99984.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-62098No hitNo description
PROSITE profilePS500906.5862278IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTENPRAGTG NRRTRSQAAP EWTVTESLIL VNEIAAVEAD CSVEFSSYQQ WDIISGNCAA  60
LEVDRNLAQC RRKWRSLLAE YDDVRKGRKS SNLDPELFDA IGRVVKGREE RGEIDRESDA  120
EIGDEDLDAT VEIETGSKRK RQRSKPKRYR EEKPKESHEE QPENTHLEDQ YLKDLLGKKS  180
KLNSPAKRRA KYIETPPTSL AEVDKNHDTE EKPKPTSVXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XSQSQPVRAK HIETPPTSLA EIDENHDIEE MPKPTSVGNI TNNNIRAENE  300
EMLKSKLKSP AKRRAKHIET PRTSLAEVDK NHDIEEKPTS VGNITNNNIR EENEEMLTLK  360
LQELAIEIQD INAESADCKE ANSENIEDYR TEFTRRQGDK LIARLGNFSN TLKQLCDLLQ  420
ECK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142KRKRQR
2137147KRKRQRSKPKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1576461e-110AC157646.35 Medicago truncatula clone mth2-164p8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003588618.12e-99uncharacterized protein LOC11421388
TrEMBLA0A2K3MME00.0A0A2K3MME0_TRIPR; Uncharacterized protein
STRINGAES588699e-99(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-33sequence-specific DNA binding transcription factors