PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12334
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 188aa    MW: 21170.2 Da    PI: 9.3286
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12334genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.1e-211965349
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               + n+  rqvtfskRr+g++KKA+ELS+L +aeva+++fs+ +k y +
  Tp57577_TGAC_v2_mRNA12334 19 VRNSNTRQVTFSKRRTGLFKKANELSILSGAEVAIVVFSPGNKPYSF 65
                               67999***********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-34968IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-27981IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.946969IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-191131IPR002100Transcription factor, MADS-box
PfamPF003197.9E-242065IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-193146IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-194667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
LCEIGERIMG RRKIEIEMVR NSNTRQVTFS KRRTGLFKKA NELSILSGAE VAIVVFSPGN  60
KPYSFGHPGV DVVAAKYLQQ DPESSDSEGD PSFDASNMNE LNLELVEVLT QIRGVEKQTE  120
AYDKILKQND VRTLLDLEEL RNSYKELQNW VKLRLSDLKI SEYLLLLATE PVVGVKAKSA  180
KKNRRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16990183MEF2C
5f28_B2e-16990183MEF2C
5f28_C2e-16990183MEF2C
5f28_D2e-16990183MEF2C
6byy_A2e-16990183MEF2 CHIMERA
6byy_B2e-16990183MEF2 CHIMERA
6byy_C2e-16990183MEF2 CHIMERA
6byy_D2e-16990183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12334
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.11e-94agamous-like MADS-box protein AGL29
TrEMBLA0A2K3M7401e-123A0A2K3M740_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.18e-88(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-31AGAMOUS-like 29