PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 228aa MW: 25063.7 Da PI: 10.4518 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 271.4 | 4.8e-83 | 66 | 227 | 133 | 301 |
GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCt 216 ++ +iee ++ke k kkr++++ p ++kakk++k +k++++ + + +k +kk++ l +ng+++D+s+lPvPvCsCt Tp57577_TGAC_v2_mRNA12320 66 NVDEIEE-LAVKKEGGKAKKRKSKAAPTTPKAKKPRK----QKDNSNVS--GQGVKPPKKTVALEINGIEMDISGLPVPVCSCT 142 2222222.23333334444444444444444444444....22222333..3679***************************** PP GAGA_bind 217 GalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvti 300 G ++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaa+Gy+++n++DLk+hWA+HGtnkfvti Tp57577_TGAC_v2_mRNA12320 143 GNPQQCYRWGCGGWQSACCTTNVSIYPLPMSVKRRGARIAGRKMSQGAFKKVLEKLAAQGYNFANAIDLKTHWARHGTNKFVTI 226 ************************************************************************************ PP GAGA_bind 301 r 301 r Tp57577_TGAC_v2_mRNA12320 227 R 227 8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.4E-103 | 1 | 227 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 7.3E-87 | 14 | 227 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MEXXXXAAVE SSNPLNYGRD NWINQRPRFY NMQVNNPNYA VPPETSQGPS FPFIPSAVTD 60 PPRNENVDEI EELAVKKEGG KAKKRKSKAA PTTPKAKKPR KQKDNSNVSG QGVKPPKKTV 120 ALEINGIEMD ISGLPVPVCS CTGNPQQCYR WGCGGWQSAC CTTNVSIYPL PMSVKRRGAR 180 IAGRKMSQGA FKKVLEKLAA QGYNFANAID LKTHWARHGT NKFVTIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12320 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142072 | 1e-174 | BT142072.1 Medicago truncatula clone JCVI-FLMt-4L16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158817.1 | 1e-115 | hypothetical protein PHAVU_002G184500g | ||||
Swissprot | Q9SKD0 | 4e-82 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | A0A2K3PLB5 | 1e-161 | A0A2K3PLB5_TRIPR; Protein basic pentacysteine1-like | ||||
STRING | XP_007158817.1 | 1e-115 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2370 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 3e-73 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12320 |