PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12294
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24305.7 Da    PI: 6.1453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12294genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.52.7e-2158104349
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                                + n+  rqvtfskRr+g++KKA+ELS+L +aeva+++fs+ +k y +
  Tp57577_TGAC_v2_mRNA12294  58 VRNSNTRQVTFSKRRTGLFKKANELSILSGAEVAIVVFSPGNKPYSF 104
                                67999***********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.83348108IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-3448107IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-2648120IPR002100Transcription factor, MADS-box
CDDcd001201.90E-3049107No hitNo description
PRINTSPR004042.3E-195070IPR002100Transcription factor, MADS-box
PfamPF003199.9E-2459104IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-197085IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-1985106IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKVFRQNVNF FSYFLDFLSF HSSLLELRND LVGEGAGHHK IRLGERIMGR RKIEIEMVRN  60
SNTRQVTFSK RRTGLFKKAN ELSILSGAEV AIVVFSPGNK PYSFGHPAVD VVAAKYLQQD  120
PESSDSEGDP SFDASNMNEL NLELVEVLTQ ICEVEKQTEA YDKILKQNDV TTLFDLEKLR  180
NSYKELQNWV KLRLSDLKIS EYLLLLATEP VVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-1648129183MEF2 CHIMERA
6byy_B7e-1648129183MEF2 CHIMERA
6byy_C7e-1648129183MEF2 CHIMERA
6byy_D7e-1648129183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.13e-87agamous-like MADS-box protein AGL29
TrEMBLA0A2K3M7401e-114A0A2K3M740_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.11e-80(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-31AGAMOUS-like 29