PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12286
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20777.6 Da    PI: 4.5634
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12286genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.94.8e-222065449
                               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                +   rqvtfskRr g++KKA+ELS+LC+aeva+++fs+ +k y +
  Tp57577_TGAC_v2_mRNA12286 20 RDPNMRQVTFSKRRSGLFKKANELSILCGAEVAIVMFSPGNKPYSF 65
                               56678**********************************9998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554556.67E-28982IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.45969IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-33968IPR002100Transcription factor, MADS-box
CDDcd001204.65E-311068No hitNo description
PRINTSPR004048.7E-201131IPR002100Transcription factor, MADS-box
PfamPF003195.8E-252065IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
LCETCERIMG RRKIEIESVR DPNMRQVTFS KRRSGLFKKA NELSILCGAE VAIVMFSPGN  60
KPYSFGHPGV DVVAAKYFQQ NHEPSDSEGD PSYDAFNMEE LNLELDEVLA QIREGEKQME  120
TYDEILKQNE VTTLSGLEEL KDSYKEFQDK VKLRLSDLEI SECMMLLAKE PVVGVNTKSA  180
KSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-189100192MEF2C
5f28_B1e-189100192MEF2C
5f28_C1e-189100192MEF2C
5f28_D1e-189100192MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.11e-93agamous-like MADS-box protein AGL29
TrEMBLA0A2K3M4201e-113A0A2K3M420_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.13e-89(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-38AGAMOUS-like 29