PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12197
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 487aa    MW: 54307.1 Da    PI: 5.2465
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12197genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.3e-35211112101
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y++++d++++e++sws+++nsf+v+++ efa  +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ 
  Tp57577_TGAC_v2_mRNA12197  21 FLQKTYDMVNDPSTDEIVSWSSTNNSFIVWNPPEFACVLLPTYFKHNNFSSFIRQLNTYGFRKTHAER---------WEFANDD 95 
                                9**************************************************************99988.........******* PP

                                XXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkk 101
                                F k++k+ll++i+r+k
  Tp57577_TGAC_v2_mRNA12197  96 FIKDQKHLLKNIHRRK 111
                                **************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.27E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5917110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3717110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.9E-192144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-195971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-197284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
METAPLSSAT AAGNGGGPAP FLQKTYDMVN DPSTDEIVSW SSTNNSFIVW NPPEFACVLL  60
PTYFKHNNFS SFIRQLNTYG FRKTHAERWE FANDDFIKDQ KHLLKNIHRR KPIHSHSNPP  120
GSVVDPERAS YDEQIEKLSR EKSSLESNLL SYKHHHSKTK LHLDEFQQRL DGIENRQKKL  180
LNNFEKALQN PSFVDQLLRK IEFMDLAALN KKRRLPEVDH VQPVAEGSLV DNHSNFRPEF  240
GNVFQQDFSN KLRLELSPAV SDMNLVSGST QGSNEDEEIP QKNLSDGELK GTQTRTGLAF  300
ASETVDLADT GTSFTFNMDS CLSRRATTTE NPNLHSLEPS SEEGDSHISC QLNLTLASCP  360
LEFNRNSYSA RSPQIDCQEI GNLAESRVTV IGKESESGVS LNRIVANGVI SLASPQEASG  420
NGQVKPAAPH AVNDVFWEQF LTERPGCLDN EEAISNYRAN PYDEQEEGRA VHGISSNIKN  480
MDNLTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-221111020129Heat shock factor protein 1
5d5v_B4e-221111020129Heat shock factor protein 1
5d5v_D4e-221111020129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12197
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504369.10.0heat stress transcription factor A-5
SwissprotQ94BZ51e-153HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A2K3MZU80.0A0A2K3MZU8_TRIPR; Heat stress transcription factor a-5-like protein
STRINGXP_004504369.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-144HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]