PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22433 Da PI: 10.2424 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.2 | 7.5e-12 | 108 | 137 | 20 | 49 |
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49 i+KKA+EL +LC+a va+iifs++gk + + Tp57577_TGAC_v2_mRNA12155 108 IFKKAYELFTLCGAYVALIIFSPSGKAFSF 137 9************************97765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00404 | 3.0E-5 | 103 | 118 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0033 | 108 | 140 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-13 | 108 | 154 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.545 | 108 | 141 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-12 | 108 | 137 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-5 | 118 | 139 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAALQGSAGS RRVRMWXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXFAIPIFK KAYELFTLCG 120 AYVALIIFSP SGKAFSFGYP DLYTVIDRYF SRVPPVNNNI RQFIEGFRST NVRDLNAQLT 180 QANDALDREK KAW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12155 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-21 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12155 |