PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12136
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 281aa    MW: 31785.4 Da    PI: 5.7392
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12136genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.6e-19154204255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrd s+   + +r++lg+f+t eeAa a+++a+++++g
  Tp57577_TGAC_v2_mRNA12136 154 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTGEEAALAYDKAALRIRG 204
                                8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.00E-32153213No hitNo description
Gene3DG3DSA:3.30.730.108.3E-32153213IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-23154213IPR016177DNA-binding domain
PROSITE profilePS5103223.749154212IPR001471AP2/ERF domain
PfamPF008477.5E-15154204IPR001471AP2/ERF domain
SMARTSM003808.7E-37154218IPR001471AP2/ERF domain
PRINTSPR003679.2E-11155166IPR001471AP2/ERF domain
PRINTSPR003679.2E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MENIHIHNST NLTNSPSPSK HSHLSTQFNN HDATSEGSIL ENVWAKIISN NDRRTNENEV  60
ECSNTWEDLP TLDERDGSME ILQRLPSLGR WISMGAEFWE QVLDSTILPT TSTSISNIED  120
YINSNKNNEI ESVDKSKKKV EGGLRKEKKT DEKHYRGVRR RPWGKYAAEI RDSSKKGARV  180
WLGTFDTGEE AALAYDKAAL RIRGSKACLN FPIEKVTNTN ANTKRESLLD SKKRGLRERG  240
EFVEEPATKK MAGLEDMLEN DVFVFQDLGI DYLDSLLSSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-30153213161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12136
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593691.21e-133ethylene-responsive transcription factor ERF094
TrEMBLA0A2K3NAH31e-148A0A2K3NAH3_TRIPR; Ethylene-responsive transcription factor erf091-like protein
STRINGAES639421e-132(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-38ERF family protein