PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12114
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 320aa    MW: 36103.9 Da    PI: 7.2233
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12114genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12137180755
                                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + Er+RR+ri++++++Lr+l+P+      + ++ a+iL  A+eYIk+Lq
  Tp57577_TGAC_v2_mRNA12114 137 ITERNRRKRIKTGLFTLRSLVPNI-----TMMDRAAILGDAIEYIKELQ 180
                                68*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-11133183No hitNo description
SMARTSM003531.8E-12136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10137180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-14137194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.9E-4252311No hitNo description
SuperFamilySSF550212.29E-5252313No hitNo description
PROSITE profilePS516719.239253319IPR002912ACT domain
CDDcd048736.20E-5253318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEFISAHCFV SINQEAISAQ SYTNMNFNEH CYTLNPGLAG ENHSSSNPGI EGPSNGSNPS  60
TEHLSFDSNF GCLIPHEYLN QPVKISPVPK VKCRRYNNTS AKCQSSLSFH SGNGEEDKEK  120
IYRGEPKKEV YHAKNLITER NRRKRIKTGL FTLRSLVPNI TMMDRAAILG DAIEYIKELQ  180
RQEIELQDEV KALEVEDCEK NTLQFRVKRD NEQEEGTKSL PLTAIKQNSS DSTRNTQMKL  240
QVEVNRIGRT DFMIKLCCEH KQGGFSRLME AIDSFGLNMV NANMTTFDGK VLNILMVEAT  300
AQDISATKLR EYLIKHLTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12114
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445993.11e-127transcription factor bHLH90
TrEMBLA0A2K3NRM80.0A0A2K3NRM8_TRIPR; Putative transcription factor ABORTED MICROSPORES-like protein
STRINGXP_004509816.11e-118(Cicer arietinum)
STRINGGLYMA08G39470.21e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-33bHLH family protein