PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28705.6 Da PI: 6.6397 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 68 | 114 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+ErrRR++iN +++Lr l+P++ +K++Ka+ L ++++ +k+L Tp57577_TGAC_v2_mRNA12077 68 KNHREAERRRRNKINCHLAKLRGLVPSS-----TKMDKATLLAEVIRQVKEL 114 58*************************9.....9************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.15E-12 | 68 | 116 | No hit | No description |
Pfam | PF00010 | 2.4E-9 | 68 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 69 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-13 | 69 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-11 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 8.36E-6 | 155 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDFSSDISRV VFNATSYNFG ASNEISRGGF VSSNSLVLDS EKGELVKSPP IIGDKKICDA 60 NKTLVALKNH REAERRRRNK INCHLAKLRG LVPSSTKMDK ATLLAEVIRQ VKELKNNANQ 120 ASKGYSIPID GDEVKVEVES CEDGGVDGSI FYKASICCDY QPELLSDLKQ TLDTLQLQLV 180 RAELSTLGDR VKNEFVYNCC KVDIYNIELC QLIASNVHQA LSSVLDKASA SMDYSLRAPH 240 PCNQLQQTST LSCNHDFCSC * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12077 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462544.1 | 1e-153 | transcription factor bHLH106 isoform X1 | ||||
TrEMBL | A0A072V5E0 | 1e-151 | A0A072V5E0_MEDTR; Transcription factor | ||||
STRING | AES64020 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8986 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40200.1 | 2e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12077 |