PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12061
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 338aa    MW: 38452.5 Da    PI: 4.8799
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.8e-1527117186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ +   sst+
  Tp57577_TGAC_v2_mRNA12061  27 CWSEEASSTLVDAWGNRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSNSNGVFSSTW 110
                                7****************************************99999**************************99999999**** PP

                   trihelix  80 pyfdqle 86 
                                p++d+l+
  Tp57577_TGAC_v2_mRNA12061 111 PFYDRLD 117
                                ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-2525117No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPDFHDSLSP PPPPPPSSRP IPVREDCWSE EASSTLVDAW GNRYLELNRG NLRQKDWQDV  60
ADAVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKARVS NSNGVFSSTW PFYDRLDLLI  120
GPNFNTKKSS SSPSPSPPVA LPLVPHRKFS NSPNAISVTP AAVALPQKRS LATVMDDGYF  180
RRNYSAVAAA AAAAEADEDE DEEDEEEEVE EEEEVEVEEE EGRGSEVDEG DKGREGMKRL  240
AKAIEKFGEM YERVEGQKLR QMVDLEKQRM EFAKDIEVQR MQMFMDTQVQ MERIKRGKRS  300
GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXWV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7677072e-66JF767707.1 Trifolium alexandrinum microsatellite TaSSR209 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462559.11e-150trihelix transcription factor ASIL2
TrEMBLA0A2K3PCX60.0A0A2K3PCX6_TRIPR; Uncharacterized protein
STRINGXP_004485895.11e-147(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-51sequence-specific DNA binding transcription factors