PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA1206 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 158aa MW: 18115.5 Da PI: 7.299 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124 | 7.5e-39 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk +rr+C++dC+++pyfpa++p++fa+vhk++G snv k+l++lpe re+a+++l+ eA++r++dPvyG+vg+++kl q Tp57577_TGAC_v2_mRNA1206 5 RCAACKSQRRRCPSDCIFSPYFPANDPQRFAYVHKIYGGSNVGKMLQQLPEYLREQAVNTLYLEARCRIQDPVYGCVGIVSKLYQ 89 6************************************************************************************ PP DUF260 86 qleqlkaelallkeel 101 q++ +++ela++++++ Tp57577_TGAC_v2_mRNA1206 90 QIHDTEVELAKIQTQI 105 ***********99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.085 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MIYGRCAACK SQRRRCPSDC IFSPYFPAND PQRFAYVHKI YGGSNVGKML QQLPEYLREQ 60 AVNTLYLEAR CRIQDPVYGC VGIVSKLYQQ IHDTEVELAK IQTQIAYHKL QNQQIEVESN 120 FNALSTVDAE TNLNFLPTQS NSMEQFQWPN QVPNLFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA1206 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-50 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491406.1 | 1e-96 | LOB domain-containing protein 23-like | ||||
Swissprot | P59467 | 3e-46 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A2K3LTZ7 | 1e-114 | A0A2K3LTZ7_TRIPR; LOB domain-containing protein 24-like | ||||
STRING | XP_004491406.1 | 4e-96 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 1e-48 | LOB domain-containing protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA1206 |