PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12052

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 962aa MW: 107892 Da PI: 7.4152

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12052	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.5	4.4e-13	58	130	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY+eYAk+ GFs + + + + +g+ + r+fvCs+eg +++ +++ C a+l+++++ ++kw+vtk++ H Tp57577_TGAC_v2_mRNA12052 58 FYSEYAKRSGFSSKAGLHGQFNADGTNMFREFVCSMEGLKRRMTES--------------CGAMLRIEQKGQNKWVVTKFVRGH 127 *************************************9997766..............******************** PP FAR1 86 nHe 88 +H+ Tp57577_TGAC_v2_mRNA12052 128 SHA 130 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-9	58	130	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-24	273	360	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.338	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-10	551	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.8E-8	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MDVHVITIGE GSGSMENNGH VELEVNDVGN SGSHAEDVVS SEPYLGMVFD SEDSAKTFYS 60 EYAKRSGFSS KAGLHGQFNA DGTNMFREFV CSMEGLKRRM TESCGAMLRI EQKGQNKWVV 120 TKFVRGHSHA TEVPDRVEKL RPRKHFSSVG RTMPETYKGV GLVPTGVMYI SIDGHHVSSE 180 NSHKIRNFPA VAGGKTSHPV KNTTSTTYTV RKPIQKKTLG RDAPNLLEYF KKVQAENPGF 240 FYAIQLDEDN RMSNVFWADA RSRTAYSHFG DAVTLDTTHR ANQYNVPYAP FTGINHHGQM 300 ILFGCALLFD DSEASFSWLF KTFLAAMNDH HPISITTDQD RSIQKAVSKV FPQARHCINK 360 RYVLREGHEK LGHVCRMHPY FHYELYNCIN LTETIEEFDF SWNSIIDKYE LRGHDWLRSL 420 YSARDQWVPA YFRDSFFAVL SPNQGFEASF LDGFVNRHTT LPMFFRQYEL ALERWFEKEI 480 ESDFETISTT PVLKTPSPME NQVAKLYTQK VFLKFQEELV ETFAYTANSI EEDGGNSIFR 540 VAKFEDDQKS YTVTLNHSEL RANCSCQMFE FSGILCRHVL TVFTVSNVFT IPSHYILKRW 600 TREAKSGVAL DGCGGDSLAH ESLTSRYTNL CREAIRYAED GAVAMETYDA AMGALREGGK 660 KIAVTKKNIA KVSPTNHRVS GNAGADKKTH ASTSDTSTAL LLWPPNDETT GFNLNDAGAP 720 VQPVADLNLP QTTPMPHKSH KRVDVPPPVH HQRVDSPSPV PRQRDDSPRP VPRRRVDGPS 780 PMPRQRDDSP PPVPRRRVDG PSPMPRQRDD SPPPVPLQQD DGPPENTVVL PCLKSMTWVM 840 ENKTSSPENK VAVINLKLQD YSKSPSSEYE VKFHLSRGTV GPVLQSMTEV SEQLSTTANK 900 VAVINLKLED AQASGESEVK FQVSRDALGA VLRSMAYIRE QLSGAVTGDV HSEPVSKKHR 960 K*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MDVHVITIGE GSGSMENNGH VELEVNDVGN SGSHAEDVVS SEPYLGMVFD SEDSAKTFYS  60
EYAKRSGFSS KAGLHGQFNA DGTNMFREFV CSMEGLKRRM TESCGAMLRI EQKGQNKWVV  120
TKFVRGHSHA TEVPDRVEKL RPRKHFSSVG RTMPETYKGV GLVPTGVMYI SIDGHHVSSE  180
NSHKIRNFPA VAGGKTSHPV KNTTSTTYTV RKPIQKKTLG RDAPNLLEYF KKVQAENPGF  240
FYAIQLDEDN RMSNVFWADA RSRTAYSHFG DAVTLDTTHR ANQYNVPYAP FTGINHHGQM  300
ILFGCALLFD DSEASFSWLF KTFLAAMNDH HPISITTDQD RSIQKAVSKV FPQARHCINK  360
RYVLREGHEK LGHVCRMHPY FHYELYNCIN LTETIEEFDF SWNSIIDKYE LRGHDWLRSL  420
YSARDQWVPA YFRDSFFAVL SPNQGFEASF LDGFVNRHTT LPMFFRQYEL ALERWFEKEI  480
ESDFETISTT PVLKTPSPME NQVAKLYTQK VFLKFQEELV ETFAYTANSI EEDGGNSIFR  540
VAKFEDDQKS YTVTLNHSEL RANCSCQMFE FSGILCRHVL TVFTVSNVFT IPSHYILKRW  600
TREAKSGVAL DGCGGDSLAH ESLTSRYTNL CREAIRYAED GAVAMETYDA AMGALREGGK  660
KIAVTKKNIA KVSPTNHRVS GNAGADKKTH ASTSDTSTAL LLWPPNDETT GFNLNDAGAP  720
VQPVADLNLP QTTPMPHKSH KRVDVPPPVH HQRVDSPSPV PRQRDDSPRP VPRRRVDGPS  780
PMPRQRDDSP PPVPRRRVDG PSPMPRQRDD SPPPVPLQQD DGPPENTVVL PCLKSMTWVM  840
ENKTSSPENK VAVINLKLQD YSKSPSSEYE VKFHLSRGTV GPVLQSMTEV SEQLSTTANK  900
VAVINLKLED AQASGESEVK FQVSRDALGA VLRSMAYIRE QLSGAVTGDV HSEPVSKKHR  960
K*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12052

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR931734	0.0	CR931734.2 Medicago truncatula chromosome 5 clone mth2-62m24, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024640285.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A396HY69	0.0	A0A396HY69_MEDTR; Putative transcription factor FAR family
STRING	XP_004491167.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12052

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]