PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA12050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | VOZ | ||||||||
Protein Properties | Length: 372aa MW: 41550.1 Da PI: 8.0693 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 210.6 | 4.5e-65 | 146 | 321 | 45 | 217 |
VOZ 45 gttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelf.dl..sllegetirewlffdkprrafesgnrk 125 ++pvlrp gi+l d+ll+aalsa ++gk+vgipecegaa akspwna+ + l +l + + + p + Tp57577_TGAC_v2_mRNA12050 146 AVAPVLRPSGIGLNDNLLLAALSANAKGKDVGIPECEGAAVAKSPWNAPGISiSLifLFLRVRLLGGGFSLISPEAHLRVETES 229 578**********************************************98513311345566666777788999999999999 PP VOZ 126 qrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlq 209 + lpdy+grgw esrk+vm+efg lkrsyymdpqp+++fewhlyeyei+++ + aly le+k vd+kks+k+k+++ds++++q Tp57577_TGAC_v2_mRNA12050 230 KGPLPDYNGRGWRESRKHVMNEFGELKRSYYMDPQPLNHFEWHLYEYEISKCYSHALYWLEFKCVDGKKSSKAKITSDSVTNMQ 313 9*********************************************************************************** PP VOZ 210 kklgrlta 217 ++grl+a Tp57577_TGAC_v2_mRNA12050 314 TQIGRLSA 321 ******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MKKIPKGSCK TASHRLFKDK AKNHVDDLQV MFLDLQFARK ESRSIDAALL EEQVHQILWE 60 WRAGLNEPSS AASLKQGRSH GSLSTDICRL LQLCEDEDDA TSLLVVPRPE PNDQTMQTVE 120 DAKAQNVHFW IVQGPHKGWT CVRTFAVAPV LRPSGIGLND NLLLAALSAN AKGKDVGIPE 180 CEGAAVAKSP WNAPGISISL IFLFLRVRLL GGGFSLISPE AHLRVETESK GPLPDYNGRG 240 WRESRKHVMN EFGELKRSYY MDPQPLNHFE WHLYEYEISK CYSHALYWLE FKCVDGKKSS 300 KAKITSDSVT NMQTQIGRLS AEFPYDSRRS AKGRAKTDAK ADIGGVYTAS NNAPSPYDYL 360 VENTNDYYVS K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA12050 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006588835.1 | 1e-107 | transcription factor VOZ1 isoform X3 | ||||
Refseq | XP_028182193.1 | 1e-107 | transcription factor VOZ1-like isoform X3 | ||||
Swissprot | Q9SGQ0 | 1e-72 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2K3MPD6 | 0.0 | A0A2K3MPD6_TRIPR; Transcription factor VOZ1-like protein | ||||
STRING | GLYMA07G32374.2 | 4e-87 | (Glycine max) | ||||
STRING | XP_007153891.1 | 5e-87 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1498 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 6e-65 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA12050 |
Publications ? help Back to Top | |||
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