PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12031
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HB-other
Protein Properties Length: 1813aa    MW: 204677 Da    PI: 5.0719
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12031genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1846101257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 kR+  t+ qle Le++++ + yps+++r eL++klgL++rq ++WF+ rR k+kk
  Tp57577_TGAC_v2_mRNA12031  46 PKRQMKTPFQLEMLEKAYALETYPSESTRVELSEKLGLSDRQLQMWFCHRRLKDKK 101
                                69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-1830102IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1731101IPR009057Homeodomain-like
PROSITE profilePS5007116.87642102IPR001356Homeobox domain
SMARTSM003897.0E-1844106IPR001356Homeobox domain
PfamPF000465.3E-1646101IPR001356Homeobox domain
CDDcd000865.06E-1447102No hitNo description
SMARTSM005712.4E-20573632IPR018501DDT domain
PROSITE profilePS5082716.188573632IPR018501DDT domain
PfamPF027915.4E-17575629IPR018501DDT domain
PfamPF050669.0E-14754821IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.0E-89661005IPR028942WHIM1 domain
PfamPF156133.4E-1311411213IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1813 aa     Download sequence    Send to blast
MDAEEAENNT QKGDDGGENS NENYNINNNN GSNSKIMSSS EGQSKPKRQM KTPFQLEMLE  60
KAYALETYPS ESTRVELSEK LGLSDRQLQM WFCHRRLKDK KELPTKKPKK VPPLPDSPTD  120
EPNPKLVIEP LNEYGSGSGS GSSPFARPEL RNVVPPRTYY ESPQTIMELR AIACVEAQLG  180
ESLREDGPIL GIEFDPLPPD AFGAPLAVAE QQKRPSLAYD NKIYERHEVR PNKAMARTFP  240
EYTFVPNQSS IRSDTFGQLS QPHLYDPMEG PTRTPPFPIG NEHLPRTHAT QSHSSRARLS  300
SQQEKHMTPY TSPPPLLSQH DKKVIPYPSP PRDNDVVPKR EPHINIANIG MNSQFTDHQI  360
VGQENSLALP GGQVFHNDVV LRVEKKRKSD DVRVAKEVEA YEIRMKKELE KQDILRRKNE  420
ERMRKEMERQ DRERRKEEER LMRERQREEE RSRREQKREE ERREKYLMKE HLRAEKRKQK  480
EEIRKEKEAE RRKAALEKAN ARRIAKESME LLEDEQLELM ELAAASKGLS SIIQIDLDTL  540
QNLESFRDSL CVFPPKSVKL KKPFAIQPWI NSDQDVGNLL MVWRFLITFA DVLELWPFTL  600
DEFVQAFHDY DSRLLCEIHV AVLKVIIKDI EDVARTPTGL GVNQNGAANP AGGHPEIVEG  660
AYTWGFDIRN WQKNLNQLTW PEILRQLALS AGFGPKLRKR SITWSYANDK EEGRSGEDVI  720
STLRNGSAAV SAVAKMQEKG LLAPRRSRHR LTPGTVKFAA FHVLSLEGSK GLNVLDLAEK  780
IQKSGLRDLT TSKTPEASIS VALTRDGKLF ERIAPSTYRV RTAFRKDPVD AEAILSEARK  840
KIQIFENGFL AGEDADDVER EEESESDEVD EDPEDDDLVN PSSRNQNTEQ YHDMNVSSVN  900
VTENSGHEVD LIQNELDTDL PCFLENGSTS KDVDLPSSVT IQPVAFEDLN TGKLDDNNME  960
IDETKSGESW VQGLTEGEYS DLSVEERLNA LVALVGVANE GNSVRLVLED RLEAANALKK  1020
QMWAEAQIDK VRLKDDYISK LDFPLLAGNK IETQEGNQSP LLDININNIK NEASPSTAEN  1080
QKGASSAQSL LIEKPSTVQD FGTGTGPDTF QSQVAAQYSK RSRSQLKSYI SHLAEEMYVY  1140
RSLPLGQDRR RNRYWQFVAS ASSNDPGSGR IFVEHHDGSW RLIDSEEDFD ILLTSLDSRG  1200
IRESHLRLML QKIEKSFKEN VLENTQYAKI GSIGEGSIKI EANEKYSMPE RHSGSDSPSS  1260
TLHDLNSGTS ETSSSFKIEL WKSENEKKAA LRRYQDFQKW MWKECYNSSI LCAMKFGVKR  1320
CKPQVDICQI CLNPYFVEDS HCNSCHSTFP SNNGFDISKH AFQCVGNLSK DIGIMEHSLP  1380
IRTRLLKVLL SYMEASVLSE AFGTIWTTDF RKRWGVKLSK SSSVEELLQM LTLFEKALRR  1440
DFLSSDFSTT DELLGLSSKS KSSAHVSADP ESVALLPWIP QTTAALSLRL FEFDSSIIYV  1500
KLEKLEPVEE KEAREYITLP SRYTPFKPNR EVEPAALDHD GLTKVKSSAK IVRSNKRGRG  1560
ASDHGRGKNL SKRMYNSKRD AGRRNVKFTE NLSQRLKQQG RGTQGQGGGR GRRTVRKRRV  1620
EKRAVEDLLL GHAAASHSSM SGREPFRGLH EEWDDGEKAS PMTPVHIGVA ENSNSAEEME  1680
YDDNAQAIEY DDNAQAIEYD DNVQAVESYD NAQAMESDDD AQAVEYDHGN WEIGYNGVSP  1740
NGWNRDLVGM SDEDVDGFED GNDNDNGNVI GFEENEEEDS EEDVMSEGSD GMANRVENVG  1800
GSYLSVSEDS SD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12031
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1584970.0AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631664.10.0homeobox-DDT domain protein RLT1 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA2Q5040.0A2Q504_MEDTR; DDT; Homeodomain-related
STRINGAES638950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1