PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11928
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 440aa    MW: 49633.9 Da    PI: 8.8326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-065072123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               + C+ C+k F+r  nL+ H r H
  Tp57577_TGAC_v2_mRNA11928 50 FICEVCNKGFKRDQNLQLHRRGH 72
                               89*******************88 PP
2zf-C2H211.40.00097127149123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                +kC +C+k +  +s+ k H + +
  Tp57577_TGAC_v2_mRNA11928 127 WKCDKCSKKYAVQSDWKAHSKIC 149
                                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.67E-84972No hitNo description
Gene3DG3DSA:3.30.160.603.3E-64972IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.9E-55072IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8875072IPR007087Zinc finger, C2H2
SMARTSM003550.0135072IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM0035511092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.67E-8122147No hitNo description
SMARTSM00355150127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMSQEAVSVP SNSNPNSNSV KRKRSLPGNP DPDSEVIALS PKSLMTTNRF ICEVCNKGFK  60
RDQNLQLHRR GHNLPWKLKQ RNPLEVIRRK VYVCPEKSCV HHEPSRALGD LTGIKKHFSR  120
KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYRCDCGT LFSRKDSFLT HRAFCESLVE  180
RNARIGSIPS NFGNNLMINT QLQRIPHQGL FGLNQEFGGP GPETFMATNF PNNNNIPHNL  240
LFSSSASGTN SDLELVLTNN MNTTFGSLLP QGQWNMNYRY NEHQTAEASF ISSGGLSMPM  300
SMNMMHAPQG VLLKLEQQQE EDKIMHADLS HLYTHNQLQE GPSHHVSTME STTTNVMING  360
NNNNNNNNVA AFNNSNNIVE MKNLFNQGNV LHDGDKHELS LTRDFLGVES LKLQQQEVPR  420
FNPIGSVMHM QNDQFGGHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35123191371Zinc finger protein JACKDAW
5b3h_F1e-35123191371Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11928
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411081e-145AC141108.3 Medicago truncatula clone mth2-22g6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024631650.10.0protein indeterminate-domain 9
RefseqXP_024631651.10.0protein indeterminate-domain 9
TrEMBLG7IKT30.0G7IKT3_MEDTR; C2H2-type zinc finger protein
STRINGAES674600.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-96C2H2-like zinc finger protein