PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11906

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 962aa MW: 110445 Da PI: 8.8087

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11906	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.8	7.7e-10	44	114	2	67
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfersp....kqCkekwenlnkrykkikeg 67 W+++ + +Li+a ++ ++l+r++ ++ +W+e++k++ +++g++r++ + Ck++++ l+k+y +k++ Tp57577_TGAC_v2_mRNA11906 44 WSEEATFTLIDAWGKLYKKLNRKNFRQYHWKEIAKAVnQHHGYSRKSlrtyVHCKNRFDALKKKYAIEKAR 114 ***********************************8778888755222278**********988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.9E-15	42	118	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MNRIQNNRSQ NHKQQQKETT PAQQKLNSVT GALPSPSTVL EDGWSEEATF TLIDAWGKLY 60 KKLNRKNFRQ YHWKEIAKAV NQHHGYSRKS LRTYVHCKNR FDALKKKYAI EKARVSENGF 120 YDNDDDDAFX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRFRRNLS AFAAAAAAAA 180 EAEIDNSDSD DSYFDNSDGS ELSNENRKRK RGRKDVEFGY REVAGRNNRE FRSTEVANFM 240 EKFSEVQERV ESSKQRRNAK EKFSEIHERV ESSKQRRNAK EKFSEIHERV ESSKQRRNVD 300 LEKRNMQFEK DCQRMLQLQN ANHSKETERT TSMNDRNEQI SKVKNLPAPT QKSQSTKRTV 360 RGATQMKKLA HALIDGQKLS IEFDESTAKP LGENKTKFRS YVAFLGRSKV SILTDDWDSV 420 DQSVKDEIWT DILKVWDVPH SGFLRKKLVA YAGERWRAFK TNLTSRYIHG DLRDRSPLEI 480 YNFLDEGTWQ AFVQTRLDPS FQAFVQTRLD PSFQEIRKKA QMRTAQNKTP HRLSRGGYDL 540 LQEKMMQEKL KEKPESLGGS VAAPPSPPPR HEQWKRARQK PSGDYTSEDT RIIAEKIDSL 600 VEKTSQGTFV PEGRNDILTE AIGRPEHSGF IRGVGGGLGI RQYFGPPPRG STPRVFSSEQ 660 IQTIKVELTQ QIKEELMQNL EAMGFSRKPS NFPSCSRNTA VPASRKGSSS VVPPIAEEDE 720 IPEQCELYVD NLFHPVAYGN VYKLGPTIHN QMLENDMVRV AVSEVLEAHA QVPIPTDEVE 780 TVEQALNNFI QWPKRLVQIV SDKDFDVDGS EKDGVSPKKS EPQLDSVQQL AEKDDVSPKK 840 SEPQLDSVQQ LVLKAMCMSE SIKLDLEHDR MKSLWLSQRD IMELCMGKQE LSITILRLWL 900 TQPESYESGY YIMIHTLNIV SAGIINLWMK VFGNPEPFQE DELVNVRQRC ASLILDFIQG 960 V*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MNRIQNNRSQ NHKQQQKETT PAQQKLNSVT GALPSPSTVL EDGWSEEATF TLIDAWGKLY  60
KKLNRKNFRQ YHWKEIAKAV NQHHGYSRKS LRTYVHCKNR FDALKKKYAI EKARVSENGF  120
YDNDDDDAFX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXRFRRNLS AFAAAAAAAA  180
EAEIDNSDSD DSYFDNSDGS ELSNENRKRK RGRKDVEFGY REVAGRNNRE FRSTEVANFM  240
EKFSEVQERV ESSKQRRNAK EKFSEIHERV ESSKQRRNAK EKFSEIHERV ESSKQRRNVD  300
LEKRNMQFEK DCQRMLQLQN ANHSKETERT TSMNDRNEQI SKVKNLPAPT QKSQSTKRTV  360
RGATQMKKLA HALIDGQKLS IEFDESTAKP LGENKTKFRS YVAFLGRSKV SILTDDWDSV  420
DQSVKDEIWT DILKVWDVPH SGFLRKKLVA YAGERWRAFK TNLTSRYIHG DLRDRSPLEI  480
YNFLDEGTWQ AFVQTRLDPS FQAFVQTRLD PSFQEIRKKA QMRTAQNKTP HRLSRGGYDL  540
LQEKMMQEKL KEKPESLGGS VAAPPSPPPR HEQWKRARQK PSGDYTSEDT RIIAEKIDSL  600
VEKTSQGTFV PEGRNDILTE AIGRPEHSGF IRGVGGGLGI RQYFGPPPRG STPRVFSSEQ  660
IQTIKVELTQ QIKEELMQNL EAMGFSRKPS NFPSCSRNTA VPASRKGSSS VVPPIAEEDE  720
IPEQCELYVD NLFHPVAYGN VYKLGPTIHN QMLENDMVRV AVSEVLEAHA QVPIPTDEVE  780
TVEQALNNFI QWPKRLVQIV SDKDFDVDGS EKDGVSPKKS EPQLDSVQQL AEKDDVSPKK  840
SEPQLDSVQQ LVLKAMCMSE SIKLDLEHDR MKSLWLSQRD IMELCMGKQE LSITILRLWL  900
TQPESYESGY YIMIHTLNIV SAGIINLWMK VFGNPEPFQE DELVNVRQRC ASLILDFIQG  960
V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11906

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632484.1	0.0	uncharacterized protein LOC11413989 isoform X1
TrEMBL	A0A2K3P7M6	0.0	A0A2K3P7M6_TRIPR; TNP1
STRING	AES67379	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF491	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	5e-25	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11906