PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11897
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 347aa    MW: 39957.1 Da    PI: 8.85
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11897genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-1653101148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                                +g+W++eEd +l+d++++ G+g +W + +++ g++R++k+c++rw++yl
  Tp57577_TGAC_v2_mRNA11897  53 KGPWSPEEDSKLKDYIEKNGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 101
                                79*********************************************97 PP
2Myb_DNA-binding38.52.7e-12108150246
                                SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Tp57577_TGAC_v2_mRNA11897 108 GEFSDEEDRIICTLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 150
                                789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6348101IPR017930Myb domain
SuperFamilySSF466891.22E-2650148IPR009057Homeodomain-like
SMARTSM007172.2E-1152103IPR001005SANT/Myb domain
PfamPF002495.8E-1553101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2354108IPR009057Homeodomain-like
CDDcd001675.09E-855101No hitNo description
PROSITE profilePS5129422.163102156IPR017930Myb domain
SMARTSM007177.2E-12106154IPR001005SANT/Myb domain
PfamPF002495.5E-11108150IPR001005SANT/Myb domain
CDDcd001671.13E-7109150No hitNo description
Gene3DG3DSA:1.10.10.605.6E-24109156IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNLWGFFIIK HNQSPQKRKP SKVLEEDIRE RKRERKKRKM GRAPCCDKAN VKKGPWSPEE  60
DSKLKDYIEK NGTGGNWISL PQKAGLRRCG KSCRLRWLNY LRPNIKHGEF SDEEDRIICT  120
LYANIGSRWS IIAAQLPGRT DNDIKNYWNT KLKKKLMNLL PQSHHNTILP YQQISSPLPS  180
HSTSFYNQLN TSFITNIEPI SLPSPISNPF YHNQESLLNG FSTNTSMQYN SIGESVVMFG  240
SEGSCCTSSD GSLGKQEEIM GFQNFMQSSH NHNKLIHGSD GRGEYLVDVN HHWENEKVNL  300
CFGKEITTGL DYDLEYIKQL ISCNNGNYLS IDENKMKEEK SMYYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24531567108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11635KRKPSKVLEEDIRERKRERK
21638KRKPSKVLEEDIRERKRERKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11897
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465364.11e-140transcription factor RAX2
TrEMBLA0A2K3MQ760.0A0A2K3MQ76_TRIPR; Transcription factor RAX2-like protein
STRINGXP_004487066.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.15e-72myb domain protein 68