PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11882
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TALE
Protein Properties Length: 605aa    MW: 68482.8 Da    PI: 7.2689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11882genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.3e-094444811954
                                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Tp57577_TGAC_v2_mRNA11882 444 FEHflHPYPTDIDKHMLATQTGLSRNQVSNWFINARVR 481
                                665569******************************87 PP
2BELL95.74e-31299367472
                       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                + q+ k+kL+ ++eeV +rYkqy++q+q+v +sFe vagl+sa+pY++lA+k +S+hF++L +ai++q+
  Tp57577_TGAC_v2_mRNA11882 299 DYQQIKTKLMCMQEEVSRRYKQYHQQMQMVFASFESVAGLNSATPYITLAMKSVSKHFKSLNNAISNQL 367
                                56888*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-37229365IPR006563POX domain
PfamPF075263.7E-35234364IPR006563POX domain
PROSITE profilePS5007111.92422485IPR001356Homeobox domain
CDDcd000864.56E-11425486No hitNo description
SMARTSM003894.4E-9425489IPR001356Homeobox domain
SuperFamilySSF466897.7E-17426490IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-27428489IPR009057Homeodomain-like
PfamPF059207.6E-18442481IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MQDLFQVRNA NYSSPEISNF LITSNPLEYQ ELGASTAEPN RLIMHQHHQQ HYGSFPHSPQ  60
HKQQYYSELI SDFGNCRNRT VPHQVIVTDW LLNGEMHQNH SLQDIVNNRP DSNMASLMHH  120
NAGQGNCVGN ASESELQQNH LNFGWKNQTD SNKQSLSLSL SSNVSKNKAY NVSQFDQVGT  180
STSRDEFQTM KYVKPSIISK DCGKSLQDMV VGMIPNSKIS TVGPLGPFTG YATVLKNSRF  240
LKIAQNLLDE FCSKFETTYD VLETEFASKG SNYSCSSSSM FHSADLVARS NFGVSMRPDY  300
QQIKTKLMCM QEEVSRRYKQ YHQQMQMVFA SFESVAGLNS ATPYITLAMK SVSKHFKSLN  360
NAISNQLKLI SEVLRNDSSI PTTNNSSKLI DTNVASLKCM DQNLQKNKPD KGPAGFHDPQ  420
LQHVWRPQRG FPERAVGILK AWLFEHFLHP YPTDIDKHML ATQTGLSRNQ VSNWFINARV  480
RVWKPMVEEV HMLDKKTTDT GESSSPNEGT FGTVSSSNQL RMDKASNKYV MQSIPEDQIQ  540
YMEFGSISID TNAEENEAEQ WRQEKRSKLE CGMSSRMDGT LMDFLPYRHS GHDVVQSLGL  600
DLFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A6e-16431489563Homeobox protein Meis2
3k2a_B6e-16431489563Homeobox protein Meis2
4xrm_A7e-16431489563Homeobox protein Meis2
4xrm_B7e-16431489563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11882
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343378.11e-173BEL1-like homeodomain protein 9
TrEMBLA0A2K3P7860.0A0A2K3P786_TRIPR; BEL1-like homeodomain protein 9-like
STRINGXP_007150172.11e-166(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-76BEL1-like homeodomain 8