PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA11873

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 1031aa MW: 118712 Da PI: 9.6744

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA11873	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.2	1.4e-10	44	135	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr..tsessst 78 W+ + + +Li+a ++ ++l+r+ ++ +W+e++k++ +r+ +r+ + Ck++++ l+k+y +k++ +++ +++ Tp57577_TGAC_v2_mRNA11873 44 WSVEATFTLIDAWGKLYNKLNRKYFRQYHWKEIAKAVndhygYSRKSRRTYVHCKNRIDALKKKYAIEKARVSENgfYDNDDDA 127 99*********************************988888888899999*********9999887766446888999 PP trihelix 79 cpyfdqle 86 +p+fd+l+ Tp57577_TGAC_v2_mRNA11873 128 FPFFDKLD 135 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.4E-17	42	137	No hit	No description
Pfam	PF03004	9.7E-6	523	663	IPR004252	Probable transposase, Ptta/En/Spm, plant
SuperFamily	SSF54001	1.96E-7	884	995	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1031 aa Download sequence Send to blast
MNRIHNNRFQ KHKQQQKETT TAPQKMNSVT GTRPSPSTVL EDGWSVEATF TLIDAWGKLY 60 NKLNRKYFRQ YHWKEIAKAV NDHYGYSRKS RRTYVHCKNR IDALKKKYAI EKARVSENGF 120 YDNDDDAFPF FDKLDSLIGD SDNLPVKKVT PSLEPPVKVP AWTLAPVGLR SGAQSAQKRP 180 TTATTEEESV EEDSRFRRNL SAFAAAAAAA AEAEIDNSDS DDLYFDDLNS LDDGSELSNE 240 NRKRKRGRKD VEFGYREVAG RTVREFGSRE VANVMEKSSQ VHERVELSKQ RRNAREKFSE 300 VHERVESSKQ RRNAREKFSE IHERVESSKQ LRNVDLEKRN MQFEKDCQRL LQLQKTNHSK 360 ETERTTSLND RNEQISKVKN LPAPTQNRSD TQSTKRNVRG ATRMKKLELD LMDGQKLPIE 420 FDESTAKPLG ENKTKFKSYV GFLGRSKVSI LTDDWDSVDQ SAKDEIWTDI LKVWDVPHSG 480 FLRKKLVAYA GERWRAFKTN LTSRYIHGDL RDRSPLEIYN FLDEETWQAF VQIRLDPSFL 540 EIRKKAQMSS AQNKTPHRLS RGGYELLQEK MMQEKLKEKK DTLGGSVAAP PSPPPRHEQW 600 KRARQKPSGD YTSEDTRIIA EKIDSLVEKT SQGTFVPQGR KDILTEAIGR PEHSGFVRGV 660 GRGVGIRQYF GSQPRGSTPP VLSSEQLQTI KVELTQQIKE ELMQDLEAMG FSKKPSNFPT 720 CSRNTAVPAS TKGSSSIVPP VLEEDEIPEQ CELYVDNLLH PVAYGNVYKL GPTIHNQMLE 780 NDMVRVAVSE VLEGHAEVPX XXXXXXXXXX XXXXXXXXXP KFLFLPTRWK RLSRPSTISF 840 NGQKDLCRLF LIRILMLMDL RKTTFRPKKS IKLDLEHDRM KSLWLSQRDV MELCMGKQEL 900 SITILRLWLT HHWQLLIICP RQNNVVFLCS LERKPDKNII HIVDSALDGY HKLQGVQKKK 960 PTWIYPICQR QPESYESGYY IMIHTLNIVS AGIINLWMQI FGNPEPFQED ELVNVQQRCA 1020 SLILDFIQGI *

Sequence ? help Back to Top

Protein Sequence Length: 1031 aa Download sequence Send to blast

MNRIHNNRFQ KHKQQQKETT TAPQKMNSVT GTRPSPSTVL EDGWSVEATF TLIDAWGKLY  60
NKLNRKYFRQ YHWKEIAKAV NDHYGYSRKS RRTYVHCKNR IDALKKKYAI EKARVSENGF  120
YDNDDDAFPF FDKLDSLIGD SDNLPVKKVT PSLEPPVKVP AWTLAPVGLR SGAQSAQKRP  180
TTATTEEESV EEDSRFRRNL SAFAAAAAAA AEAEIDNSDS DDLYFDDLNS LDDGSELSNE  240
NRKRKRGRKD VEFGYREVAG RTVREFGSRE VANVMEKSSQ VHERVELSKQ RRNAREKFSE  300
VHERVESSKQ RRNAREKFSE IHERVESSKQ LRNVDLEKRN MQFEKDCQRL LQLQKTNHSK  360
ETERTTSLND RNEQISKVKN LPAPTQNRSD TQSTKRNVRG ATRMKKLELD LMDGQKLPIE  420
FDESTAKPLG ENKTKFKSYV GFLGRSKVSI LTDDWDSVDQ SAKDEIWTDI LKVWDVPHSG  480
FLRKKLVAYA GERWRAFKTN LTSRYIHGDL RDRSPLEIYN FLDEETWQAF VQIRLDPSFL  540
EIRKKAQMSS AQNKTPHRLS RGGYELLQEK MMQEKLKEKK DTLGGSVAAP PSPPPRHEQW  600
KRARQKPSGD YTSEDTRIIA EKIDSLVEKT SQGTFVPQGR KDILTEAIGR PEHSGFVRGV  660
GRGVGIRQYF GSQPRGSTPP VLSSEQLQTI KVELTQQIKE ELMQDLEAMG FSKKPSNFPT  720
CSRNTAVPAS TKGSSSIVPP VLEEDEIPEQ CELYVDNLLH PVAYGNVYKL GPTIHNQMLE  780
NDMVRVAVSE VLEGHAEVPX XXXXXXXXXX XXXXXXXXXP KFLFLPTRWK RLSRPSTISF  840
NGQKDLCRLF LIRILMLMDL RKTTFRPKKS IKLDLEHDRM KSLWLSQRDV MELCMGKQEL  900
SITILRLWLT HHWQLLIICP RQNNVVFLCS LERKPDKNII HIVDSALDGY HKLQGVQKKK  960
PTWIYPICQR QPESYESGYY IMIHTLNIVS AGIINLWMQI FGNPEPFQED ELVNVQQRCA  1020
SLILDFIQGI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA11873

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632485.1	0.0	uncharacterized protein LOC11413989 isoform X2
TrEMBL	A0A2K3P7M6	0.0	A0A2K3P7M6_TRIPR; TNP1
STRING	AES67379	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF491	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-28	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA11873