PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 204aa MW: 23894.2 Da PI: 4.5404 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.5 | 1.8e-16 | 57 | 139 | 10 | 96 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 v++ gr +p fa+ +k + ++ +l+d++gr W vk+ r +g+ ++ +GWk+F ++n L+e+Df+vF++++++ f + Tp57577_TGAC_v2_mRNA11660 57 VGEGGRPLIPIAFAKLVHLKRRVMVDFILRDRRGRDWHVKV--RPIGGKLYFDDGWKRFGEDNYLEENDFLVFTRIENNVF--M 136 56778899******88899999999****************..*******************************9988888..6 PP EEE CS B3 94 vkv 96 +k+ Tp57577_TGAC_v2_mRNA11660 137 FKI 139 655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 7.5E-7 | 48 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 48 | 143 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.82E-16 | 57 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-14 | 57 | 140 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.55E-14 | 57 | 140 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 62 | 141 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSRLFDESIL HRSNWGSDMV CSEVKVEELM RLFYMTQVRS CLSKEVLALG SKSRVLVGEG 60 GRPLIPIAFA KLVHLKRRVM VDFILRDRRG RDWHVKVRPI GGKLYFDDGW KRFGEDNYLE 120 ENDFLVFTRI ENNVFMFKIH EFSSMCEKIK VMDEEEENNM MEDEEELDDD DNNEDHDDVD 180 DGDVNMIDAY SKLCCVKTEQ LKC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11660 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3KCK7 | 1e-82 | A0A2K3KCK7_TRIPR; B3 domain-containing protein | ||||
STRING | XP_004497762.1 | 8e-35 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12852 | 11 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 8e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11660 |