PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11571
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 261aa    MW: 29614.4 Da    PI: 8.3752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11571genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1374120354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+++E+rRRdriN+ +++Lr+l+Pk+      K++Ka+ L  +++ +k+L
  Tp57577_TGAC_v2_mRNA11571  74 KSHSQAEKRRRDRINTQLANLRKLIPKS-----DKMDKAALLGSVIDQVKDL 120
                                79*************************8.....7***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1273124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1074120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.03E-974123No hitNo description
Gene3DG3DSA:4.10.280.108.3E-1474123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1077126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.57E-5168203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MENYNNDSSE WQQQQQQHKH WSQYSCDDHS QFPTQILPHN VSDSSSGSFQ YSEFHTWPLP  60
IEESLEDRAV SASKSHSQAE KRRRDRINTQ LANLRKLIPK SDKMDKAALL GSVIDQVKDL  120
KRKAMDVSKV ITVPTEIDEV SIDYNHVEDE TNNNKLNKFK NNFIIKASVC CDDRPELFSE  180
LIQVLKGLRL TTVKADIASV GGRIKSILIL CSKDSEENVC INTLKQSLKS AVTKIASSSM  240
VSNCPTRSKR QRFFLPSHFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11571
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0525310.0BT052531.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-C-12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600927.21e-164transcription factor bHLH51
SwissprotQ9XEF09e-50BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A2K3MUD40.0A0A2K3MUD4_TRIPR; Transcription factor bHLH51-like protein
STRINGAES711781e-163(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]