PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GeBP | ||||||||
Protein Properties | Length: 364aa MW: 42361.3 Da PI: 4.372 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 82.5 | 6.1e-26 | 119 | 216 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk 82 + qrlw+++De+ lL+G +d+ +++g ++d+ fy++v + + ++k+qlv+K+rrLK+K k+ +k +++ ++sf+ Tp57577_TGAC_v2_mRNA11519 119 QYQRLWTKQDEMELLKGYLDYIKQQGRtatTLQSDVASFYDQVMPKFNTYFNKNQLVDKLRRLKRKHKMVLDK-SKEVQVSFKI 201 579******************9999985544556***************************************.888899**** PP DUF573 83 ehdqkifelskkiWg 97 +h+q ife+s+kiWg Tp57577_TGAC_v2_mRNA11519 202 PHEQAIFEISHKIWG 216 **************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.2E-25 | 121 | 216 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MLKPLVSWIF SPSSSSSSSS EEEEEEEEES FDINNEESDY ENYENDNVED QLENVDNEEK 60 NNFLSTCDVD DALEASDAIP XXXXXXXXXX XXXXXXXXXT IATPSTRQRN NKYSGGVRQY 120 QRLWTKQDEM ELLKGYLDYI KQQGRTATTL QSDVASFYDQ VMPKFNTYFN KNQLVDKLRR 180 LKRKHKMVLD KSKEVQVSFK IPHEQAIFEI SHKIWGNDTD HDVFDVDESR HVSESPDLID 240 NVKMKNEYVD DCEEMDKRPH KRMRLTTDDV NTKNDQNYGD VTSIHGFIEE TMRSCFPPLL 300 KELLDDASVE PLGALPMMLS TGEARDEQWL KRRILELEVY LNRLELLQGQ IKARLEELKS 360 SLD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11519 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591030.2 | 1e-169 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A2K3N2Z2 | 0.0 | A0A2K3N2Z2_TRIPR; Uncharacterized protein | ||||
STRING | XP_004496019.1 | 1e-164 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 1e-44 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11519 |