PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1150
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 483aa    MW: 53831 Da    PI: 4.646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1150genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.56e-28581991128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 
                               lp G +F+P+d el+ e+L++k+   +      +  ee+i++++    i++++P++Lp  +k++ ++++fF+++ ++y+ g+rk+
  Tp57577_TGAC_v2_mRNA1150  58 LPLGTKFDPSDIELL-EHLAAKCGVGNrephlfI--EEFIPTLEgdqgICYAHPENLP-GAKKDGSSVHFFHRTMNAYSIGQRKR 138
                               689************.999999876665666432..344554423344**********.55677899****************** PP

                       NAM  76 ra......tk.sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               r+      t+ + +W++tgk+k++++ +g ++g kk++v+y  +g+++k+ k+dW mh+y+l
  Tp57577_TGAC_v2_mRNA1150 139 RKihhqglTEpHVRWHKTGKTKAIIE-NGVHMGFKKIMVLYirSGNESKSYKSDWKMHQYHL 199
                               *7455555225788************.999***********888999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3348218IPR003441NAC domain
PROSITE profilePS5100529.19358218IPR003441NAC domain
PfamPF023655.4E-1159199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
LLICSYRSCW FFNKGAFAKK LKSTTLSLAD QIKDCGAYCE CPNCHYRIDN SDVLWPGLPL  60
GTKFDPSDIE LLEHLAAKCG VGNREPHLFI EEFIPTLEGD QGICYAHPEN LPGAKKDGSS  120
VHFFHRTMNA YSIGQRKRRK IHHQGLTEPH VRWHKTGKTK AIIENGVHMG FKKIMVLYIR  180
SGNESKSYKS DWKMHQYHLG TDEDEKNGEY VVSKIFYKQV DKIEEKPMAE EHDDSITLRT  240
NPTTPKPNPP NPPRTGKCVE NDDNIDETAH LPFAEDAKSI TVESHAPQSD IQDHGNAENS  300
AWLAGVSQAL EKSLYDDLDD ILLCKEIFDS STLFDDFGLD SITTNDLAYY ENKMTGNGNV  360
TSGTSTSVLD TLELSNPPEN LACLAGESQA LENSEYKGLD DLLLCKEILD SSALLDDTGL  420
DSITTKDIPY YDNRMTGNDN ITRGTTSTSV LDTLELGTPP DFDLSNLTFG SQDSILDWVD  480
RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0980155e-49BT098015.1 Soybean clone JCVI-FLGm-26B21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499395.10.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A2K3NAB70.0A0A2K3NAB7_TRIPR; NAC domain-containing protein (Fragment)
STRINGXP_004499395.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-81NAC domain containing protein 44