PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11490
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 265aa    MW: 29967.7 Da    PI: 6.2546
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11490genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-083272348
                               -HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                               +W++Ia++++  Rt++++k++w+++l
  Tp57577_TGAC_v2_mRNA11490  3 RWAAIASYLP-QRTDNDIKNYWNTHL 27
                               4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.03131IPR017930Myb domain
SuperFamilySSF466891.25E-7233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-12333IPR009057Homeodomain-like
CDDcd001676.44E-6327No hitNo description
PfamPF002497.5E-7327IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
LSRWAAIASY LPQRTDNDIK NYWNTHLKKK LNKFQAALDQ PSNSTTTYLS KSFSDRSLDI  60
SNNHASSLKL NITTHNSHQS SSSTYASSTE NISRLLEGWM RTSPNSQIKG NYQYGHHQDF  120
QSINDDIMDD DDNNEFENNG KLLVKSSSVP NLEIHHHNHN HNHQKISKGD LLQEGGVSHD  180
QEFDSILSFE NLNNGVTWDK STCDSMPHEK CSTSSSSDHH KNNNNNNNIK NLCGAPPPLS  240
FLEKWLLDEN VGHVEEMMEL SPMF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737275e-32AB573727.1 Lupinus albus LaMYB4 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624757.11e-119myb-related protein 306
TrEMBLG7L2L71e-118G7L2L7_MEDTR; Myb transcription factor
STRINGAES809751e-119(Medicago truncatula)
STRINGAES809951e-119(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82033145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.22e-20myb domain protein 60