PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 185aa MW: 21755 Da PI: 5.5216 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 72 | 7.8e-23 | 15 | 75 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+++++++ rsYYrCt+ C++ k+v+r++e+p + +tY g+H+++ Tp57577_TGAC_v2_mRNA11457 15 DDGHAWRKYGQKKITNAKYFRSYYRCTHMddqYCEAIKHVQRTQENPPLYRTTYYGHHTCT 75 8***************************98889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.0E-24 | 9 | 75 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.382 | 9 | 77 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-22 | 9 | 75 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-31 | 14 | 76 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-23 | 15 | 74 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
SISPTWEKTT SILIDDGHAW RKYGQKKITN AKYFRSYYRC THMDDQYCEA IKHVQRTQEN 60 PPLYRTTYYG HHTCTSSFHS NINLESNLSS DDSSILLSFD KNILNKQEYS FPQPPSPPSP 120 RLTSTKEEFK EEIHDDYFAQ NQLFSPQNIL SCDFEVYFDY LRHVTMITSS ESFEFENVYD 180 QFGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-20 | 14 | 74 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11457 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003596301.1 | 6e-99 | probable WRKY transcription factor 63 | ||||
TrEMBL | G7IR31 | 1e-97 | G7IR31_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES66552 | 2e-98 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12638 | 11 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 2e-22 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11457 |