PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11384 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 107aa MW: 12252.2 Da PI: 9.9208 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34 | 3.8e-11 | 3 | 38 | 12 | 47 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgkly 47 f +Rr ++KKA+ + +LC+++va ++fs + k++ Tp57577_TGAC_v2_mRNA11384 3 AFLNRRSSVFKKASDIFTLCGTNVAFVVFSLKEKIF 38 699***************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 12.601 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-14 | 3 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-10 | 4 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 6 | 21 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 21 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
QPAFLNRRSS VFKKASDIFT LCGTNVAFVV FSLKEKIFLF GHPNVNTVID RYLSRDPPQN 60 KGIMPFIEAQ RNTNMLELNS QMSHINNALE IERRCRDELS FTLKMT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11384 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469942.1 | 9e-38 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_024634594.1 | 6e-39 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2Z6NQ74 | 3e-37 | A0A2Z6NQ74_TRISU; Uncharacterized protein | ||||
STRING | AES62809 | 3e-36 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11384 |