PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11691.1 Da PI: 8.0222 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.5e-14 | 2 | 39 | 6 | 45 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Tp57577_TGAC_v2_mRNA11315 2 HQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 39 68999************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.0E-8 | 1 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-11 | 1 | 39 | No hit | No description |
PROSITE profile | PS51294 | 21.916 | 1 | 46 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-12 | 1 | 40 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.3E-12 | 2 | 50 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-19 | 2 | 42 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
SHQEAALIIE LHSILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLFSHD FIPSFTTFSN 60 IHTPYNIGSM DSFFPNPNVI LNINHHHQDQ LYLPTSSPNQ QG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-14 | 1 | 46 | 63 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11315 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013444365.1 | 8e-51 | transcription factor MYB26 | ||||
TrEMBL | A0A072TLY2 | 2e-49 | A0A072TLY2_MEDTR; Myb-like DNA-binding domain protein | ||||
STRING | GLYMA07G01050.2 | 3e-46 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3014 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 3e-26 | myb domain protein 26 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11315 |