PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11035
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 252aa    MW: 28686.3 Da    PI: 9.346
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11035genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-1460104147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r ++++eE  +l+ a + +G++ W+tI + ++ gRt +q+k+++++ 
  Tp57577_TGAC_v2_mRNA11035  60 RSKFSKEEKTKLLAAQRFYGNN-WATICKLFP-GRTNNQVKNHFYMM 104
                                789*****************99.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.66E-1943113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-84365IPR009057Homeodomain-like
PROSITE profilePS5129417.13155109IPR017930Myb domain
SMARTSM007179.5E-1359107IPR001005SANT/Myb domain
PfamPF002492.0E-1160104IPR001005SANT/Myb domain
CDDcd001672.39E-1062105No hitNo description
Gene3DG3DSA:1.10.10.603.0E-1366105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVMSLQFETA EDTGSQHYNT QQKVRKVESN CAEDNGKWQC DDEKSCRLRW INQLDPKINR  60
SKFSKEEKTK LLAAQRFYGN NWATICKLFP GRTNNQVKNH FYMMMAKMQR EQSSSFSRME  120
NSIFRTPPTM YRITSTTDVP NSACTNVSCF TGPLLYRQAY GSQMGLHGER KVEVRNFGYD  180
TNFSAMKGSC VSRMGKINGV DKSNYSYSNS EASVSESGST IRTNVSIFGE CENVRSKTKL  240
QYFDFLGIGD K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-144410143100B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013451507.12e-64transcription factor MYB54
TrEMBLA0A072UI906e-63A0A072UI90_MEDTR; Myb transcription factor
STRINGXP_004489664.11e-62(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-30myb domain protein 105