PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10971
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LBD
Protein Properties Length: 183aa    MW: 20327.3 Da    PI: 7.9992
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-39141131100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i  lq
  Tp57577_TGAC_v2_mRNA10971  14 SCAACKLLKRRCIPNCIFAPYFHSDECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGSIALLQ 97 
                                6*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                +++++l+++la +k++
  Tp57577_TGAC_v2_mRNA10971  98 RKMMELQHDLAIAKDR 113
                                **********999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.13313114IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-3914111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKGMKGYEPR SSSSCAACKL LKRRCIPNCI FAPYFHSDEC KKFAKVHKVF GASNVSKILI  60
EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GSIALLQRKM MELQHDLAIA KDRLARCRAV  120
TAATTVATTP FVDSLHSHVS LPPFPEFYTS SDLNDIFCHG SSSQLSGQNE TVDDFNQIPY  180
IF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4491166113LOB family transfactor Ramosa2.1
5ly0_B2e-4491166113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR3786611e-179CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence.
GenBankCR9370291e-179CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417048.11e-106PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL83e-61LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A2K3NPU01e-132A0A2K3NPU0_TRIPR; LOB domain-containing protein 21-like
STRINGGLYMA11G35500.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-62LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]