PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10938
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 298aa    MW: 34441.3 Da    PI: 5.6716
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10938genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.71.5e-28180265186
                   trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                rW++ ev+aLi++r+ +e +++  g++    Wee+s++m +rg++rs+k+Ckekwen+nk+yk++  + +kr + +s+tc+yf+
  Tp57577_TGAC_v2_mRNA10938 180 RWPDAEVQALIAVRTALEYKFSHmGSKGSSIWEEISDAMLDRGYNRSAKKCKEKWENINKYYKRTVGSGRKR-PLNSKTCSYFN 262
                                8*********************846777999**************************************997.9********** PP

                   trihelix  84 qle 86 
                                +l+
  Tp57577_TGAC_v2_mRNA10938 263 ELD 265
                                *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-22179267No hitNo description
PROSITE profilePS500907.155179238IPR017877Myb-like domain
CDDcd122031.08E-22179244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
LDDDDDDDVE NSSASTKEFG SRKKRKKTAR KLEDFVSNLV KTVMEKQEQM HNELMEMIDK  60
KENERIQREE AWRREEMERI KKDEEARAAE RARSLALISY IQKLLGQEIQ IPQPEEESQK  120
LLSRAIQIYQ PAEGSGKREE GDVALSNNRR DFNGDPSNNR WPVVVNNNKR DFNGEPCNNR  180
WPDAEVQALI AVRTALEYKF SHMGSKGSSI WEEISDAMLD RGYNRSAKKC KEKWENINKY  240
YKRTVGSGRK RPLNSKTCSY FNELDNLYRN GYSNSLGDAL TITNNVSISE EKEQGEI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10938
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486347.11e-119trihelix transcription factor GT-2 isoform X1
RefseqXP_004486348.11e-119trihelix transcription factor GT-2 isoform X2
TrEMBLA0A2K3KY070.0A0A2K3KY07_TRIPR; Uncharacterized protein
STRINGXP_004486348.11e-118(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-36Trihelix family protein