PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA10928

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 661aa MW: 76482.3 Da PI: 5.4408

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA10928	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27	1.5e-08	81	126	47	90
FAR1 47 ktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Tp57577_TGAC_v2_mRNA10928 81 X-XXHQRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNIHNHELL 126 3.678999**************99867789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-6	82	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.7E-18	258	350	IPR018289	MULE transposase domain
Pfam	PF04434	1.1E-6	531	560	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.606	532	565	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-4	540	567	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence Send to blast
MTSLATKNLW IRKQQCPCGD WKCYITYEGD SEEGSVAPES VKEEKISSCR AMIITPYVGM 60 AFISVILFVT DQGLHRXXXX XXXHQRDRKS VRCGCDAKMY LSKEVVDGVS QWFVVQFSNI 120 HNHELLEDDQ VRLLPAYRKI HEADQERILL LSKAGFPIHR IVKMLEVEKG IQGGHLPFLE 180 RDVRNFVQNR KKIVQENEAL LSEKRENDVL ELLEVCKAMK EADVEFVYDF TVDENEKVEN 240 IAWSYGDSVN ANAMFGDVIY FDTSHRSITY GLLFGVWFGI DNCGRTIFFG CVLLQDETPQ 300 SFAWALQAFL RFMRGRCPQT ILSDLDPGLR DAIRSEFPGT KHVISVWNII NKVPSWFSLP 360 LGSRYAEFKS EFNALFNIEN TEEFELQWSQ MISVFGLDSD KHIDLLYSVR ASWAQPYVRG 420 YFLARMATTA YSKSIDAFLK GIFTQHTCLR SFFEQVGISA NFQRQSHQET QFTNLRTCIP 480 IEEHARSILT PYAFNALQQE LSLAMQYATS EMANGSYIIR HFKRLDGEWL VFWLPEDEQI 540 HCSCKEFESS GILCRHALHV LVIKNYFQLP DKYYLSRWRR ECSLLVEDEN NNQSIIGGEW 600 FQEYQSLAET LFSESSITKD RSDFVRKELT KELNRILNEV RNLPETDEVC NMNVTVLPNS 660 *

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence Send to blast

MTSLATKNLW IRKQQCPCGD WKCYITYEGD SEEGSVAPES VKEEKISSCR AMIITPYVGM  60
AFISVILFVT DQGLHRXXXX XXXHQRDRKS VRCGCDAKMY LSKEVVDGVS QWFVVQFSNI  120
HNHELLEDDQ VRLLPAYRKI HEADQERILL LSKAGFPIHR IVKMLEVEKG IQGGHLPFLE  180
RDVRNFVQNR KKIVQENEAL LSEKRENDVL ELLEVCKAMK EADVEFVYDF TVDENEKVEN  240
IAWSYGDSVN ANAMFGDVIY FDTSHRSITY GLLFGVWFGI DNCGRTIFFG CVLLQDETPQ  300
SFAWALQAFL RFMRGRCPQT ILSDLDPGLR DAIRSEFPGT KHVISVWNII NKVPSWFSLP  360
LGSRYAEFKS EFNALFNIEN TEEFELQWSQ MISVFGLDSD KHIDLLYSVR ASWAQPYVRG  420
YFLARMATTA YSKSIDAFLK GIFTQHTCLR SFFEQVGISA NFQRQSHQET QFTNLRTCIP  480
IEEHARSILT PYAFNALQQE LSLAMQYATS EMANGSYIIR HFKRLDGEWL VFWLPEDEQI  540
HCSCKEFESS GILCRHALHV LVIKNYFQLP DKYYLSRWRR ECSLLVEDEN NNQSIIGGEW  600
FQEYQSLAET LFSESSITKD RSDFVRKELT KELNRILNEV RNLPETDEVC NMNVTVLPNS  660
*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA10928

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570140.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_012570144.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X3
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1S3E317	0.0	A0A1S3E317_CICAR; Uncharacterized protein
STRING	XP_004486340.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA10928

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]