PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10918
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 535aa    MW: 59982.7 Da    PI: 5.3404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10918genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4202.1e-1281615321374
                       GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                l+e+L++cA+avs+gd e a+ ++++ l +++s +gdp+qRl ay++e+L+arl +s+s +ykal++ e +   s e ++++++
  Tp57577_TGAC_v2_mRNA10918 161 LKEVLITCAQAVSDGDIESASGYMNNvLGKMVSVSGDPIQRLSAYMLEGLRARLESSGSVIYKALKCDEPT---SNELMNYMQI 241
                                5789********************8636888***************************************9...99999***** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                                +++++P++kf+++  N  I ea+++e+r+HiiDf+i qG+QW++LlqaL+ Rp+gpp +R+Tg+++++s+  +   l+ +g++L
  Tp57577_TGAC_v2_mRNA10918 242 LYHACPYFKFAYISSNVFICEALQNESRIHIIDFQIAQGTQWLSLLQALTRRPGGPPFVRVTGIDDSQSFhaRGGGLHIVGKKL 325
                                ******************************************************************9999889999******** PP

                       GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                a++A+++gvpfef+  va   +d++le+L+v++gEalaVn+ ++lh+++desvs+e++rd++L+lv+ lsPkvv +veqe+++n
  Tp57577_TGAC_v2_mRNA10918 326 ADYAKTCGVPFEFHS-VAMFGSDVQLEDLAVQNGEALAVNFPFALHHMPDESVSTENHRDRLLRLVRILSPKVVLLVEQESNTN 408
                                ***************.79999*************************************************************** PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                                +++F++rf+e+l+yy+a+f+s+++ lpr++++ri+ E+++++r+ivn++aceg+er+erhe ++kWr+r++ aGF p+pls ++
  Tp57577_TGAC_v2_mRNA10918 409 TSPFFQRFVETLDYYTAMFESIDVALPRDDKKRISTEQHCVARDIVNIIACEGDERVERHELFGKWRARFSLAGFVPLPLSPSV 492
                                ************************************************************************************ PP

                       GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 ++++ ll++++++ yr+ee + +++l Wk+r + ++SaWr
  Tp57577_TGAC_v2_mRNA10918 493 IDSIRNLLKHFNEN-YRIEETDVAIYLAWKSRFMCTFSAWR 532
                                ************55.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.947135513IPR005202Transcription factor GRAS
PfamPF035147.1E-126161532IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MQVTLNISPV SDSDPVTPNK RYYVLFSHFD FLKMGTSQEQ PNSACINSSS NGSSSQGTNV  60
SYESSNMKKQ FYTLESSQAS TDFTAFDSDN NMNGSPICVY YSADNNSFEL KQKLKELEIT  120
LLGPESDIVD SCQSFSNGNR HKGGSQHNWS EIVEMIPNLD LKEVLITCAQ AVSDGDIESA  180
SGYMNNVLGK MVSVSGDPIQ RLSAYMLEGL RARLESSGSV IYKALKCDEP TSNELMNYMQ  240
ILYHACPYFK FAYISSNVFI CEALQNESRI HIIDFQIAQG TQWLSLLQAL TRRPGGPPFV  300
RVTGIDDSQS FHARGGGLHI VGKKLADYAK TCGVPFEFHS VAMFGSDVQL EDLAVQNGEA  360
LAVNFPFALH HMPDESVSTE NHRDRLLRLV RILSPKVVLL VEQESNTNTS PFFQRFVETL  420
DYYTAMFESI DVALPRDDKK RISTEQHCVA RDIVNIIACE GDERVERHEL FGKWRARFSL  480
AGFVPLPLSP SVIDSIRNLL KHFNENYRIE ETDVAIYLAW KSRFMCTFSA WRCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-581655328375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10918
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486330.10.0scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2K3LHL30.0A0A2K3LHL3_TRIPR; SCARECROW-like protein 13-like
STRINGXP_004486330.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13