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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA10918 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
GRAS |
Protein Properties |
Length: 535aa MW: 59982.7 Da PI: 5.3404 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA10918 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 420 | 2.1e-128 | 161 | 532 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83
l+e+L++cA+avs+gd e a+ ++++ l +++s +gdp+qRl ay++e+L+arl +s+s +ykal++ e + s e ++++++
Tp57577_TGAC_v2_mRNA10918 161 LKEVLITCAQAVSDGDIESASGYMNNvLGKMVSVSGDPIQRLSAYMLEGLRARLESSGSVIYKALKCDEPT---SNELMNYMQI 241
5789********************8636888***************************************9...99999***** PP
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
+++++P++kf+++ N I ea+++e+r+HiiDf+i qG+QW++LlqaL+ Rp+gpp +R+Tg+++++s+ + l+ +g++L
Tp57577_TGAC_v2_mRNA10918 242 LYHACPYFKFAYISSNVFICEALQNESRIHIIDFQIAQGTQWLSLLQALTRRPGGPPFVRVTGIDDSQSFhaRGGGLHIVGKKL 325
******************************************************************9999889999******** PP
GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
a++A+++gvpfef+ va +d++le+L+v++gEalaVn+ ++lh+++desvs+e++rd++L+lv+ lsPkvv +veqe+++n
Tp57577_TGAC_v2_mRNA10918 326 ADYAKTCGVPFEFHS-VAMFGSDVQLEDLAVQNGEALAVNFPFALHHMPDESVSTENHRDRLLRLVRILSPKVVLLVEQESNTN 408
***************.79999*************************************************************** PP
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
+++F++rf+e+l+yy+a+f+s+++ lpr++++ri+ E+++++r+ivn++aceg+er+erhe ++kWr+r++ aGF p+pls ++
Tp57577_TGAC_v2_mRNA10918 409 TSPFFQRFVETLDYYTAMFESIDVALPRDDKKRISTEQHCVARDIVNIIACEGDERVERHELFGKWRARFSLAGFVPLPLSPSV 492
************************************************************************************ PP
GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++++ ll++++++ yr+ee + +++l Wk+r + ++SaWr
Tp57577_TGAC_v2_mRNA10918 493 IDSIRNLLKHFNEN-YRIEETDVAIYLAWKSRFMCTFSAWR 532
************55.*************************8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 535 aa
Download sequence Send
to blast |
MQVTLNISPV SDSDPVTPNK RYYVLFSHFD FLKMGTSQEQ PNSACINSSS NGSSSQGTNV 60 SYESSNMKKQ FYTLESSQAS TDFTAFDSDN NMNGSPICVY YSADNNSFEL KQKLKELEIT 120 LLGPESDIVD SCQSFSNGNR HKGGSQHNWS EIVEMIPNLD LKEVLITCAQ AVSDGDIESA 180 SGYMNNVLGK MVSVSGDPIQ RLSAYMLEGL RARLESSGSV IYKALKCDEP TSNELMNYMQ 240 ILYHACPYFK FAYISSNVFI CEALQNESRI HIIDFQIAQG TQWLSLLQAL TRRPGGPPFV 300 RVTGIDDSQS FHARGGGLHI VGKKLADYAK TCGVPFEFHS VAMFGSDVQL EDLAVQNGEA 360 LAVNFPFALH HMPDESVSTE NHRDRLLRLV RILSPKVVLL VEQESNTNTS PFFQRFVETL 420 DYYTAMFESI DVALPRDDKK RISTEQHCVA RDIVNIIACE GDERVERHEL FGKWRARFSL 480 AGFVPLPLSP SVIDSIRNLL KHFNENYRIE ETDVAIYLAW KSRFMCTFSA WRCS*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |