PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10844
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 317aa    MW: 34569.3 Da    PI: 7.1014
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10844genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.2e-334094155
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Tp57577_TGAC_v2_mRNA10844 40 KPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 94
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-323795IPR009057Homeodomain-like
PROSITE profilePS5129410.3413797IPR017930Myb domain
TIGRFAMsTIGR015573.2E-244095IPR006447Myb domain, plants
SuperFamilySSF466891.29E-164096IPR009057Homeodomain-like
PfamPF002491.2E-74293IPR001005SANT/Myb domain
PfamPF143792.2E-15138183IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MYPRLIHPHE GIVVGQDDLQ GGGVSNHKGD PCLVLTADPK PRLRWTQDLH ERFVDAVTQL  60
GGPSKATPKA IMRTMNVKGL TLFHLKSHLQ KYRLGKQSGK DIGEGCKDGM TGSYLLESPS  120
TDNSSPKLPT SDTNEGYEIK EALRAQMEVQ SKLHLQVEAE KHLQIRQDAE RRYMAMLERA  180
CKMLADQFIG ATVIDTDSQK FQGIENKAPR GSLVDHLGFY SLPPSTEVAG VNVQEEEIPP  240
TLPPQRADCS TESCLTSHES SGGLTLEGTP SAGKRRMLGM DSMTAPLIWS DAKMKTQAIN  300
LGQGNHPLGI SRYGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-184096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-184096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-184096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-184096157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10844
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1397930.0BT139793.1 Medicago truncatula clone JCVI-FLMt-13F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594367.10.0protein PHR1-LIKE 2 isoform X1
RefseqXP_024631419.10.0protein PHR1-LIKE 2 isoform X1
TrEMBLA0A2K3NVH60.0A0A2K3NVH6_TRIPR; MYB family transcription factor
STRINGAES646180.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.13e-66G2-like family protein