PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10803
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family CAMTA
Protein Properties Length: 1032aa    MW: 114685 Da    PI: 5.8707
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.91.8e-4458736118
                       CG-1  36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                 gsl+L++rk++ryfrkDG++w+kkkdgktvrE+hekLKvg+++vl+cyYah+een++fqrr+yw+Le ++ +iv+vhyl+vk
  Tp57577_TGAC_v2_mRNA10803   5 GGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLDVK 87 
                                69******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010765.3E-46187IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143763.044192IPR005559CG-1 DNA-binding domain
PfamPF038591.6E-37586IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.2E-4438526IPR013783Immunoglobulin-like fold
PfamPF018331.0E-5441515IPR002909IPT domain
SuperFamilySSF812965.29E-16441527IPR014756Immunoglobulin E-set
SuperFamilySSF484037.31E-16629735IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.7E-16632736IPR020683Ankyrin repeat-containing domain
CDDcd002041.13E-12640772No hitNo description
PROSITE profilePS5029717.555641749IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-6646734IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.778674706IPR002110Ankyrin repeat
SMARTSM002480.012674703IPR002110Ankyrin repeat
SMARTSM002482200713742IPR002110Ankyrin repeat
SMARTSM000158.6852874IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-7853903IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500968.169854882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0071855873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.038875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.688876900IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1032 aa     Download sequence    Send to blast
LTISGGSLFL FDRKVLRYFR KDGHNWRKKK DGKTVREAHE KLKVGSIDVL HCYYAHGEEN  60
ENFQRRSYWM LEPDMMHIVF VHYLDVKVNK TNIGASTDTK GVTSDSQNGS SVSSGFPANY  120
GNMPSGSADA MSPTSTLTSL CEDADSEDIH HASSGFHTFR ESQNLGNGPL MDKVDARSNS  180
SYLTHPFSGD HGQLSFSGPN YLPLVQGGKS NQSGATYAEG QRALNIASWD NVMEKSAGLH  240
TDPSLVSSNS IPSSSMGNII EQEHSVFTEG RASQSLHSNW QIPFEDNTGD FPKWSFTQSL  300
NLEFESDYST ELLGKETNNA SSEIGPDLFC FNFEPKEQSV QQNLSKEHTP AQSQDALKSE  360
CGVHGEHSAN YSLNMKHAFM EAESLKKVDS FSRWISKELA AVDDLHMQSS PGISWGTDEC  420
GNVIDDTSLN LSLSQDQLFS IHDFSPKWAY AGSEIEVLII GTFLKSKPEV ATCNWSCMFG  480
EVEVPATVLA NGILCCQAPP HVIGRIPFYV TFSNRFACSE VREFEFREGF TRNVDLADFF  540
NSSTEMTLHL QLEELLTLNS VHLSDQVFED DMEKRNLILK LISLKEEEEY SSNEEPTGDM  600
NISKHRMEVH IFHRQVKEKL YSWLLHKVTE TGKGPHVFGK DGQGVLHLVA ALGYDWAIAP  660
IVTSGVNINF RDVNGCTALH WAASCGRERT VVLLVSMGAA AGALTDPCTA FPSGRTPADI  720
ASSCGHKGIS GFLAESLLTS HLESLTVDDV NKDGAKETLG MKAVQTISER IATPVFSGDI  780
PDPDAICLKD SLDAVRNATQ AADRIHQVYR MQSFQRKQLA QYEGDDEFGL SDQQALSVLA  840
SKASKSGHGD GSVNAAAIQI QKKFRGWTKR KEFLFIRQRV VKIQAHVRGH QVRKKYKSII  900
WSVGILEKVV IRWRRKGSGL RGFRPDAVIK APNQPSNDPV KEDDYDFLKE GRKQSEERFQ  960
KALSRVKSMV QYPEARAQYR RLLNVVDDFR QTKQASTSSP ISSEEAVDGV EDLIDIDMLF  1020
DDDNFLPIVF D*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10803
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504800.10.0calmodulin-binding transcription activator 2-like isoform X1
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A2K3NT690.0A0A2K3NT69_TRIPR; Calmodulin-binding transcription activator 2-like protein
STRINGXP_004504800.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]