PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 526aa MW: 60017.2 Da PI: 5.9199 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.9e-10 | 474 | 523 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 + rWT E++ l d+vk++G g+W+ I + + R++ ++k++w+++ Tp57577_TGAC_v2_mRNA10781 474 KRRWTSLEEDTLRDGVKMFGEGNWRDIREFYRkifEFRSAGDLKDKWRNL 523 579*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 466 | 525 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.733 | 469 | 525 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-13 | 471 | 524 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-5 | 473 | 525 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-8 | 474 | 523 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.64E-16 | 475 | 525 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MDKVISNWTM EFLIQSFVPD SLIQKTLTVL PNSTADSRLK IALLLRTLQT TLLNASLSET 60 SLEILEHLEN LYHNDAIPIF DAMRSAYCAV AVESTVKYLV ACPEAPSGEY YSAVRRIWHQ 120 RVHKLSEEEE GRRRSELLSD ELDQWRQDVE AALWNVRVSE RLVGLNTRRD AMNQMNRFLK 180 EAWETIGLSY IDSMETVSIG NALRHERVCE IASGSVVSNK CEGKLEGLRK EKMNSVGHDE 240 NENENVNNNE NENEENDNVN GDVATMRENH GNEQLEERVG TYCDANQEVG GCDSSKGDKE 300 IRKDNHQLKR KHSAIQTYHT GVRISDAEEA SEEAKTTNLS FKFENLPSAE VEKVWESLRS 360 SSIEVKAMVK DPLPDALHAS EIVRSKLAAK DINRRPPVEN QSGHVDAPDS TECKTIVLYQ 420 PNDINLGKKS SVHCSSSSRR LLPKLMERGS SAHTFEWDDS IENKPHVKQP KKKKRRWTSL 480 EEDTLRDGVK MFGEGNWRDI REFYRKIFEF RSAGDLKDKW RNLIR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 475 | PKKKKRR |
2 | 470 | 475 | KKKKRR |
3 | 471 | 475 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10781 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500362.1 | 0.0 | uncharacterized protein LOC101503526 isoform X1 | ||||
TrEMBL | A0A2K3N793 | 0.0 | A0A2K3N793_TRIPR; Telomeric repeat-binding factor (Fragment) | ||||
STRING | XP_004500362.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 5e-09 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10781 |