PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10780
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 526aa    MW: 60017.2 Da    PI: 5.9199
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10780genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.9e-10474523147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                + rWT  E++ l d+vk++G g+W+ I +      + R++ ++k++w+++
  Tp57577_TGAC_v2_mRNA10780 474 KRRWTSLEEDTLRDGVKMFGEGNWRDIREFYRkifEFRSAGDLKDKWRNL 523
                                579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-12466525IPR009057Homeodomain-like
PROSITE profilePS5129415.733469525IPR017930Myb domain
SuperFamilySSF466893.59E-13471524IPR009057Homeodomain-like
SMARTSM007174.6E-5473525IPR001005SANT/Myb domain
PfamPF002497.2E-8474523IPR001005SANT/Myb domain
CDDcd116607.64E-16475525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDKVISNWTM EFLIQSFVPD SLIQKTLTVL PNSTADSRLK IALLLRTLQT TLLNASLSET  60
SLEILEHLEN LYHNDAIPIF DAMRSAYCAV AVESTVKYLV ACPEAPSGEY YSAVRRIWHQ  120
RVHKLSEEEE GRRRSELLSD ELDQWRQDVE AALWNVRVSE RLVGLNTRRD AMNQMNRFLK  180
EAWETIGLSY IDSMETVSIG NALRHERVCE IASGSVVSNK CEGKLEGLRK EKMNSVGHDE  240
NENENVNNNE NENEENDNVN GDVATMRENH GNEQLEERVG TYCDANQEVG GCDSSKGDKE  300
IRKDNHQLKR KHSAIQTYHT GVRISDAEEA SEEAKTTNLS FKFENLPSAE VEKVWESLRS  360
SSIEVKAMVK DPLPDALHAS EIVRSKLAAK DINRRPPVEN QSGHVDAPDS TECKTIVLYQ  420
PNDINLGKKS SVHCSSSSRR LLPKLMERGS SAHTFEWDDS IENKPHVKQP KKKKRRWTSL  480
EEDTLRDGVK MFGEGNWRDI REFYRKIFEF RSAGDLKDKW RNLIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469475PKKKKRR
2470475KKKKRR
3471475KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500362.10.0uncharacterized protein LOC101503526 isoform X1
TrEMBLA0A2K3N7930.0A0A2K3N793_TRIPR; Telomeric repeat-binding factor (Fragment)
STRINGXP_004500362.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.15e-09TRF-like 5