PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10701
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GeBP
Protein Properties Length: 455aa    MW: 49459.2 Da    PI: 5.3209
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10701genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57367.62.8e-21230332596
                     DUF573   5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk..........aksgkep 78 
                                 ++se De+++L+G+ df +ktgk+ps++id f++fvk+s+ ++v+++ql  Kir L++K++   ++           k+++  
  Tp57577_TGAC_v2_mRNA10701 230 XIFSEGDELAILRGVADFLSKTGKDPSKNIDSFHDFVKNSLGATVTNEQLKRKIRGLREKYESLTNEqlkrkirglrEKYESCD 313
                                69***********************************************************98776666678888777788888 PP

                     DUF573  79 sfskehdqkifelskki.W 96 
                                +f k+hd+k++el kki W
  Tp57577_TGAC_v2_mRNA10701 314 NFIKPHDKKALELFKKIkW 332
                                9*************99955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.1E-18231330IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAPSKSLLID DPPSATASAT SSESSDDEKN YYIQLPCSSQ KQPAVVEGEE EIGDEVSSSE  60
EEDDSSSEQE LQHSQPASQN PPPSTSISNP KPVASAESES EEEDSSSEEL QHSQPAASQN  120
PTPSTPNSNP NPKSVASAES ESESGSDSAD SEPKPTTPHD TKLKQQHASK PIKTQPQAQS  180
SAQAQTTPKS GNKRANDDNN ANGNAAKRSK GKETVSAAAG GXXXXXXXXX IFSEGDELAI  240
LRGVADFLSK TGKDPSKNID SFHDFVKNSL GATVTNEQLK RKIRGLREKY ESLTNEQLKR  300
KIRGLREKYE SCDNFIKPHD KKALELFKKI KWGNNGGNVA GEENGKAVVV KSPKKDVNVK  360
VKHIGSSSRN VESVSDNNVI LKEICRFGVD MGLSALNKDA VKQGLEMIAE SSRAEMERQW  420
RRLHVTELEV LMNLAQFVKE LSREILEELK KSIH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10701
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3M3801e-164A0A2K3M380_TRIPR; Mediator-associated protein 1-like (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.19e-17DNA-binding storekeeper protein-related transcriptional regulator