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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10591 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23266.2 Da PI: 8.289 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.8e-20 | 110 | 160 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIrdp+ r +r++lg+f tae Aa+a+++a+ k++g Tp57577_TGAC_v2_mRNA10591 110 KKYRGVRQRA-WGKWVAEIRDPK----RaTRVWLGTFQTAENAARAYDQAAIKYHG 160 59*****998.**********83....57*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 111 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-36 | 111 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.815 | 111 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 111 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 111 | 169 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.9E-11 | 112 | 123 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.58E-31 | 112 | 168 | No hit | No description |
PRINTS | PR00367 | 1.9E-11 | 134 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDVPIWNDNI VATPLLPNKE EENSIIVSTL VNVLSSSNSN SNSNNNVVVP VPVPVQDKEA 60 ATSSYTSGSL PLLSYENLYD VNTCNACKIN GCLGCRLFIE KDKEGEKKKK KYRGVRQRAW 120 GKWVAEIRDP KRATRVWLGT FQTAENAARA YDQAAIKYHG VRAKLNFDFS DYNDLVATLD 180 DEKKKKLSAN VEERKTNIIS FGSTSEQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 110 | 167 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 109 | KDKEGEKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10591 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU571152 | 3e-76 | CU571152.5 M.truncatula DNA sequence from clone MTH2-44F3 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004509207.1 | 6e-65 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 8e-31 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2K3LAW7 | 1e-116 | A0A2K3LAW7_TRIPR; Ethylene-responsive transcription factor erf109-like protein | ||||
STRING | AES85879 | 3e-76 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2962 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 4e-27 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10591 |
Publications ? help Back to Top | |||
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