PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10587
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 272aa    MW: 30262.2 Da    PI: 8.3098
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10587genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.42.1e-37251162102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+ye+++d+ ++++iswsengn+fvvl++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++
  Tp57577_TGAC_v2_mRNA10587  25 FLSKTYEMVDDPLTDDVISWSENGNTFVVLKHAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEN 99 
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                Fk+g++ell +ikr+k+
  Tp57577_TGAC_v2_mRNA10587 100 FKRGQRELLATIKRRKT 116
                                ***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3914108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3521114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3325114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLDVKARICE NREEQMSQRS APAPFLSKTY EMVDDPLTDD VISWSENGNT FVVLKHAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DKWEFANENF KRGQRELLAT IKRRKTLSPM  120
IGRPIGVGLN STSNSGGEDM GSTSTGSVER NTYFADLSSE NEKLKKDNEK LSVELALAKK  180
QCDELVAFLQ NVTNVSPDQI NRIIRQGTSG SSLDGVHFYE DLNAAPVGEG KCEGLKLFGV  240
KIDMANAKGD CRKRGHEDSI GSANNKLKTV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-282511629131Heat shock factor protein 1
5d5v_B5e-282511629131Heat shock factor protein 1
5d5v_D5e-282511629131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10587
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509144.11e-123heat shock factor protein HSF24
SwissprotP223359e-90HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2Z6N4L01e-176A0A2Z6N4L0_TRISU; Uncharacterized protein
STRINGXP_004509144.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-66heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]