PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10584
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 497aa    MW: 57352.3 Da    PI: 7.2639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10584genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.61.7e-28151236187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                                rW++qe+l+L+e+r++++ +++++ +k+plW++ s+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+
  Tp57577_TGAC_v2_mRNA10584 151 RWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFR 232
                                8***********************************998*******************************98..55667***** PP

                   trihelix  84 qlea 87 
                                qlea
  Tp57577_TGAC_v2_mRNA10584 233 QLEA 236
                                **85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.969144209IPR017877Myb-like domain
PfamPF138378.1E-19151237No hitNo description
CDDcd122033.70E-19151216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEMEDHHHHH HNHHHHEQQH QQQQQQQQQQ HYVNVSGNTN TNSITDFRQL MNIGQRTTST  60
TTDHHFPTAE LFPAAGNPNM TVTPHYEMMM FGRQVSDIMP RSFHDFVSTD SAAAAIATTA  120
TTSVVSTPTL SGNLEAETTV CLGGVDASNG RWPRQETLTL LEIRSRLDPQ FKEATQKGPL  180
WDQLSRIMCE EHGYQRSGKK CREKFENLYK YYKKTKEGKA GRQDGKHYRF FRQLEALYGQ  240
NNNPSSSSLP ENNFCTNNQE MFHSQNKHCD SLSLTNSTEF DTSSSDNDDH NESSMEKRKK  300
KSSGRSFWKV KIKDFIDSQM KKLVVKQEEW LEKLTKTLEQ KEKERVLREE EWRKQEKERL  360
EKEHKFWAKE RAWIEARDAA LMEALHKLKG NDEIINTQTS SHDGNKKRKE NSRSCFYFDN  420
NNNVDRSCLY NNNGGGSYCG DVNDQREELG RVVRNDGSNS SNVVVAAENC FPLLMSEGGN  480
LWENYSLKVS KANQNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10584
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019424888.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS02e-94PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2K3MV500.0A0A2K3MV50_TRIPR; Trihelix transcription factor GT-2-like protein
STRINGXP_004494146.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-63Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]