PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10573
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 365aa    MW: 40914.1 Da    PI: 9.9139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10573genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.3e-12181021097
                                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefel 92 
                                 ++++ + +pkk + + g++  ++  + l  +sg++W++ +   kk + ++l+  GW++F k+n +   + ++F+++++++f  
  Tp57577_TGAC_v2_mRNA10573  18 GFNTNSMKVPKKIVMNLGEELWNNALIFLIGSSGEKWKMSI--LKKENDIYLQnIGWQKFLKDNSVLNEELLLFTYKEENRF-- 97 
                                5677889*******777877789999***************..888888666637********************9887777.. PP

                                EEEEE CS
                         B3  93 vvkvf 97 
                                 v++f
  Tp57577_TGAC_v2_mRNA10573  98 QVQIF 102
                                88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-164106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-174106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.6599105IPR003340B3 DNA binding domain
CDDcd100173.89E-89103No hitNo description
SMARTSM010194.1E-711105IPR003340B3 DNA binding domain
PfamPF023622.5E-918102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDHDQQDKPS FFAIIKEGFN TNSMKVPKKI VMNLGEELWN NALIFLIGSS GEKWKMSILK  60
KENDIYLQNI GWQKFLKDNS VLNEELLLFT YKEENRFQVQ IFCKNGLERP CVQKEPEVAA  120
PIVPETTGSS QQKTPAADSV CVKEEKEEVV APMVVKRKRG RPRKNAPPPP ERCFKEKGAE  180
AEAAATMAAK GMEDRPRTND FPERVCVKKK EAEAAATTVA KGMKDSPRKN ASPERVCVCV  240
AKKEAEAARA TMVAKGMMNR PKYVSPERVF VMKKEAESTA STMAAKGMKD RPKYVSPERV  300
FVMKKEAESA TSTMAARGMM DIPKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSCR  360
NNGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10573
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606840.15e-71B3 domain-containing protein REM23
TrEMBLA0A2K3LJ720.0A0A2K3LJ72_TRIPR; B3 domain-containing protein
STRINGAES890372e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-10B3 family protein