PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10519 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 159aa MW: 18196.6 Da PI: 7.0302 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 68 | 156 | 14 | 97 |
T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 14 grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 + +p +f ++h +++++++ ++ l+ ++g++W k+ + ++ +r + ++GWkeF+k+n+Lk+gD ++F+l + s + Tp57577_TGAC_v2_mRNA10519 68 CFGHIPSEFGKRHllDLDNKQG-DIHLRLLNGKVWPAKYLIriANGLERyEMYSSGWKEFAKDNNLKVGDACTFELLPTsSIVT 150 5557**********96665454.999999**********6666666666467889********************986657777 PP .EEEEE CS B3 92 lvvkvf 97 + v++f Tp57577_TGAC_v2_mRNA10519 151 FIVHIF 156 788887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.7E-5 | 23 | 155 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-17 | 57 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-18 | 68 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.0E-15 | 71 | 157 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.02E-21 | 72 | 157 | No hit | No description |
PROSITE profile | PS50863 | 12.21 | 72 | 158 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MIFNAEKSQQ QCNLREEQNR ERFSLTMTKA SCSVEDSASI SLRRNFLASI LLQRRNEEEA 60 NEAHDSACFG HIPSEFGKRH LLDLDNKQGD IHLRLLNGKV WPAKYLIRIA NGLERYEMYS 120 SGWKEFAKDN NLKVGDACTF ELLPTSSIVT FIVHIFKD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10519 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024634792.1 | 3e-28 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A2Q2N5 | 3e-43 | A2Q2N5_MEDTR; Transcriptional factor B3 | ||||
TrEMBL | G7KVW7 | 5e-43 | G7KVW7_MEDTR; Transcriptional factor B3 family protein | ||||
STRING | AES78894 | 2e-41 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 2e-09 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10519 |